Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007108.1 Corchorus capsularis cultivar CVL-1 contig07129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52368

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7678--7726
21
2.3
21
85
0
62
28
28
32
10
1.90
9288--9317
16
1.9
16
93
6
53
36
3
13
46
1.60
18683--18745
24
2.5
24
85
10
74
49
7
14
28
1.71
28497--28522
10
2.6
10
100
0
52
50
19
7
23
1.73
29776--29828
13
4.2
12
76
13
54
71
13
1
13
1.22
29917--30529
305
2.0
305
93
0
1039
29
10
19
40
1.85
31094--31133
14
2.7
15
80
7
55
15
22
0
62
1.32
42484--42525
21
2.0
21
81
9
50
42
9
11
35
1.74
43093--43169
31
2.5
30
89
4
109
32
19
18
29
1.95
46230--46385
40
3.9
40
92
0
267
23
20
3
53
1.60
46358--46412
27
2.0
27
86
6
76
23
20
3
52
1.62
46318--46673
67
5.0
67
73
16
272
22
21
3
52
1.61
46278--46708
104
3.9
106
80
11
403
23
21
3
52
1.61
46385--46726
40
9.0
40
84
8
327
22
21
2
52
1.59
46238--46531
146
2.0
147
92
2
493
23
21
3
52
1.60
46560--46643
16
5.3
15
73
16
80
17
21
2
58
1.50
46552--46644
32
2.9
32
95
0
168
18
21
3
56
1.55
48682--48706
10
2.5
10
100
0
50
48
20
8
24
1.76
50060--50139
42
2.0
37
81
11
88
28
10
2
58
1.43

Tables:   1

The End!