genome.fa.s7109.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007109.1 Corchorus capsularis cultivar CVL-1 contig07130, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28159

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
852--903	10	4.8	10	80	15	59	13	48	26	11	1.77
3148--3172	10	2.5	10	100	0	50	48	20	8	24	1.76
4107--4133	6	4.5	6	100	0	54	29	0	14	55	1.40
6381--6419	20	1.9	21	84	5	53	66	25	5	2	1.25
6392--6434	22	2.0	21	86	4	59	67	20	6	4	1.33
7368--7435	30	2.3	30	94	0	118	35	23	20	20	1.96
11901--12022	27	4.5	27	69	7	86	21	29	24	24	1.99
12044--12192	27	5.5	27	76	6	140	22	26	26	24	2.00
12032--12191	54	3.0	54	79	7	164	22	27	27	22	1.99
13525--13580	27	2.1	27	86	0	76	21	35	23	19	1.96
17042--17194	48	3.2	48	87	0	189	19	16	29	34	1.94
17042--17163	24	5.1	24	68	0	82	18	16	31	33	1.93
17121--17196	24	3.2	24	75	0	89	25	17	22	35	1.95
17874--17924	25	2.0	25	84	0	66	25	11	27	35	1.91
18248--18331	27	3.1	27	77	13	100	19	27	28	25	1.98
18204--18331	54	2.4	54	85	0	157	20	26	28	24	1.99
18333--18392	27	2.2	27	84	0	75	20	30	25	25	1.99
18382--18443	27	2.3	27	91	0	106	24	27	24	24	2.00
19667--19722	27	2.1	27	96	0	103	19	39	21	19	1.93
21460--21585	17	6.9	17	68	20	69	61	2	9	26	1.40
21458--21594	44	3.2	43	80	13	124	62	2	9	25	1.37
21502--21594	21	4.2	22	73	14	68	65	1	8	24	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23952--23983	11	2.9	11	90	0	55	37	0	18	43	1.51
23952--24006	19	2.6	22	75	21	64	40	1	18	40	1.61
25383--25418	15	2.4	15	90	0	54	16	11	5	66	1.40

Tables:   1

The End!