Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007110.1 Corchorus capsularis cultivar CVL-1 contig07131, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69359

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1493--1531
19
2.1
19
85
9
53
12
38
10
38
1.78
1493--1539
21
2.3
20
82
7
51
17
36
8
38
1.80
13384--13430
24
2.0
24
82
0
58
40
12
17
29
1.86
14609--14711
51
2.0
51
90
3
163
22
21
18
37
1.94
14728--15163
186
2.3
186
83
5
515
26
24
14
34
1.94
14673--15214
62
8.6
62
77
6
457
26
23
15
34
1.94
15400--16157
64
11.5
64
76
10
665
28
22
13
34
1.93
15410--16157
134
5.7
133
82
5
862
28
22
13
34
1.93
15617--15985
70
5.4
69
73
11
280
28
21
14
35
1.93
15936--16169
63
3.7
62
80
8
253
27
23
13
35
1.92
17095--17123
10
3.0
10
95
5
51
20
37
10
31
1.86
20427--20489
30
2.1
30
88
5
92
20
33
15
30
1.94
20861--20934
33
2.2
33
90
0
112
36
16
12
35
1.86
20950--21013
33
1.9
33
83
0
83
45
20
9
25
1.80
22444--22476
9
3.7
9
100
0
66
18
0
0
81
0.68
23976--24091
33
3.5
33
93
0
187
43
14
10
31
1.79
24703--24738
19
1.9
18
88
5
54
41
2
22
33
1.68
26022--26055
16
2.2
16
89
5
52
29
2
8
58
1.43
28870--28907
19
2.0
19
89
0
58
26
23
23
26
2.00
57257--57291
17
2.1
17
100
0
70
11
5
11
71
1.30

Tables:   1

The End!