Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01007118.1 Corchorus capsularis cultivar CVL-1 contig07139, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 32293
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Found at i:330 original size:10 final size:10
Alignment explanation
Indices: 315--343 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
305 TGGACAGCTC
315 TATGTGTGTG
1 TATGTGTGTG
325 TATGTGTGTG
1 TATGTGTGTG
335 TATGTGTGT
1 TATGTGTGT
344 ATGTATGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.00, G:0.38, T:0.52
Consensus pattern (10 bp):
TATGTGTGTG
Found at i:1212 original size:24 final size:26
Alignment explanation
Indices: 1161--1212 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
1151 TTACTCAACT
**
1161 AAAAACTCTATTTTTATTTTTCTGTA
1 AAAAACTCTATTTTTATTTTAATGTA
1187 AAAAACTCTATTTTTA-TTTAAT-TA
1 AAAAACTCTATTTTTATTTTAATGTA
1211 AA
1 AA
1213 TCTAATATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
25 4 0.17
26 16 0.67
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (26 bp):
AAAAACTCTATTTTTATTTTAATGTA
Found at i:5076 original size:22 final size:22
Alignment explanation
Indices: 4632--5228 Score: 213
Period size: 22 Copynumber: 27.6 Consensus size: 22
4622 ATGATCCCAT
*
4632 TATGAAATTTTGATAACCTTC-T
1 TATGAAATTTTGATAACC-TCAC
* *
4654 TATGAAATTTTAATAACGAT-AC
1 TATGAAATTTTGATAAC-CTCAC
* * * ***
4676 TATGGAATTTCGAGAACCTTTT
1 TATGAAATTTTGATAACCTCAC
** ***
4698 TAT--AATTTTTTTAACCTTGT
1 TATGAAATTTTGATAACCTCAC
* * * *
4718 TATGAAATTTGGTTAACTTCCC
1 TATGAAATTTTGATAACCTCAC
* * *
4740 TAAGGAATTTTGA-AGACCTCAA
1 TATGAAATTTTGATA-ACCTCAC
* * *
4762 TATAAAATTTTGATAACTTCCC
1 TATGAAATTTTGATAACCTCAC
* *
4784 AATGAAATTTTGATAACCAACAC
1 TATGAAATTTTGATAACC-TCAC
* *
4807 TATGAGATATTGATAACCTC-C
1 TATGAAATTTTGATAACCTCAC
* *
4828 ATATGATATATTGATAA--TCAC
1 -TATGAAATTTTGATAACCTCAC
* * *
4849 GTTATGAAAATTTAAAAACCTC-C
1 --TATGAAATTTTGATAACCTCAC
* * * * *
4872 ATATGAACTGTTAATAATCACAC
1 -TATGAAATTTTGATAACCTCAC
* * * **
4895 TCTAAAATTTTGATAATCAGAC
1 TATGAAATTTTGATAACCTCAC
* ** *
4917 TCTGAAATTTTGATAGTCACAC
1 TATGAAATTTTGATAACCTCAC
* * * *
4939 TATGAAATTGTGATGACATCGC
1 TATGAAATTTTGATAACCTCAC
*
4961 TATGAAATTTTGATAAATCTTC-C
1 TATGAAATTTTGAT-AA-CCTCAC
* * *
4984 TATAAAATTTTGATAACTTTC-T
1 TATGAAATTTTGATAAC-CTCAC
*
5006 TATGAAATCTTGATAA-CT-AC
1 TATGAAATTTTGATAACCTCAC
*
5026 --T--AATTTTGATAACCTCCC
1 TATGAAATTTTGATAACCTCAC
** *
5044 TATGATTTTTTGATAACCTCAT
1 TATGAAATTTTGATAACCTCAC
* *
5066 TATGAAATTTTGTTAATCTC-C
1 TATGAAATTTTGATAACCTCAC
* *
5087 TCATGAAATTTTGATCTACAT-AC
1 T-ATGAAATTTTGAT-AACCTCAC
*
5110 TATGAAATTTTGATAACCTTC-T
1 TATGAAATTTTGATAACC-TCAC
* * *
5132 TGTGAAATTTTG-TAAACTAAAC
1 TATGAAATTTTGATAACCT-CAC
5154 TATGAAATTTTGATAACCTTCA-
1 TATGAAATTTTGATAACC-TCAC
*
5176 TATGAAATTTTGATATCCTC-C
1 TATGAAATTTTGATAACCTCAC
* * *
5197 -CTG-AATTTTGACATCCTCA-
1 TATGAAATTTTGATAACCTCAC
5216 T-TGAAATTTTGAT
1 TATGAAATTTTGAT
5229 TACTCCATAA
Statistics
Matches: 426, Mismatches: 112, Indels: 76
0.69 0.18 0.12
Matches are distributed among these distances:
16 10 0.02
17 2 0.00
18 2 0.00
19 16 0.04
20 30 0.07
21 14 0.03
22 302 0.71
23 44 0.10
24 6 0.01
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.40
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTCAC
Found at i:5099 original size:44 final size:43
Alignment explanation
Indices: 4632--5228 Score: 242
Period size: 44 Copynumber: 13.8 Consensus size: 43
4622 ATGATCCCAT
* * *
4632 TATGAAATTTTGATAACCTTCTTATGAAATTTTAATAACGAT-AC
1 TATGAAATTTTGATAACC-TCCTATGAAATTTTGATAAC-CTCAC
* * * * * ** ***
4676 TATGGAATTTCGAGAACCT--TTTTATAATTTTTTTAACCTTGT
1 TATGAAATTTTGATAACCTCCTATGA-AATTTTGATAACCTCAC
* * * * * *
4718 TATGAAATTTGGTTAACTTCCCTAAGGAATTTTGA-AGACCTCAA
1 TATGAAATTTTGATAACCT-CCTATGAAATTTTGATA-ACCTCAC
* * * *
4762 TATAAAATTTTGATAACTTCCCAATGAAATTTTGATAACCAACAC
1 TATGAAATTTTGATAACCT-CCTATGAAATTTTGATAACC-TCAC
* * * *
4807 TATGAGATATTGATAACCTCCATATGATATATTGATAA--TCAC
1 TATGAAATTTTGATAACCTCC-TATGAAATTTTGATAACCTCAC
* * * * * * * *
4849 GTTATGAAAATTTAAAAACCTCCATATGAACTGTTAATAATCACAC
1 --TATGAAATTTTGATAACCTCC-TATGAAATTTTGATAACCTCAC
* * *** * ** *
4895 TCTAAAATTTTGATAATCAGACTCTGAAATTTTGATAGTCACAC
1 TATGAAATTTTGATAA-CCTCCTATGAAATTTTGATAACCTCAC
* * * *
4939 TATGAAATTGTGATGACATCGCTATGAAATTTTGATAAATCTTC-C
1 TATGAAATTTTGATAACCTC-CTATGAAATTTTGAT-AA-CCTCAC
* * * *
4984 TATAAAATTTTGATAACTTTCTTATGAAATCTTGATAA-CT-AC
1 TATGAAATTTTGATAAC-CTCCTATGAAATTTTGATAACCTCAC
** *
5026 --T--AATTTTGATAACCTCCCTATGATTTTTTGATAACCTCAT
1 TATGAAATTTTGATAACCT-CCTATGAAATTTTGATAACCTCAC
* * * *
5066 TATGAAATTTTGTTAATCTCCTCATGAAATTTTGATCTACAT-AC
1 TATGAAATTTTGATAACCTCCT-ATGAAATTTTGAT-AACCTCAC
* * * *
5110 TATGAAATTTTGATAACCTTCTTGTGAAATTTTG-TAAACTAAAC
1 TATGAAATTTTGATAACC-TCCTATGAAATTTTGATAACCT-CAC
* *
5154 TATGAAATTTTGATAACCTTCATATGAAATTTTGATATCCTC-C
1 TATGAAATTTTGATAACC-TCCTATGAAATTTTGATAACCTCAC
* * * *
5197 -CTG-AATTTTGACATCCTCAT-TGAAATTTTGAT
1 TATGAAATTTTGATAACCTCCTATGAAATTTTGAT
5229 TACTCCATAA
Statistics
Matches: 412, Mismatches: 109, Indels: 69
0.70 0.18 0.12
Matches are distributed among these distances:
37 1 0.00
38 26 0.06
39 14 0.03
40 6 0.01
41 15 0.04
42 34 0.08
43 9 0.02
44 228 0.55
45 73 0.18
46 6 0.01
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.40
Consensus pattern (43 bp):
TATGAAATTTTGATAACCTCCTATGAAATTTTGATAACCTCAC
Found at i:5205 original size:19 final size:20
Alignment explanation
Indices: 5156--5228 Score: 76
Period size: 19 Copynumber: 3.6 Consensus size: 20
5146 AACTAAACTA
* *
5156 TGAAATTTTGATAACCTTCATA
1 TGAAATTTTGATATCC-TCA-C
*
5178 TGAAATTTTGATATCCTCCC
1 TGAAATTTTGATATCCTCAC
* *
5198 TG-AATTTTGACATCCTCAT
1 TGAAATTTTGATATCCTCAC
5217 TGAAATTTTGAT
1 TGAAATTTTGAT
5229 TACTCCATAA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 16 0.37
20 10 0.23
21 2 0.05
22 15 0.35
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.42
Consensus pattern (20 bp):
TGAAATTTTGATATCCTCAC
Found at i:5359 original size:22 final size:22
Alignment explanation
Indices: 5334--5377 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
5324 AATCACATTT
*
5334 TGAAAATGTGATAAGCTCTTTA
1 TGAAAATGTGATAACCTCTTTA
* *
5356 TGAAATTTTGATAACCTCTTTA
1 TGAAAATGTGATAACCTCTTTA
5378 ATAAATTTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (22 bp):
TGAAAATGTGATAACCTCTTTA
Found at i:5383 original size:22 final size:22
Alignment explanation
Indices: 5342--5503 Score: 107
Period size: 22 Copynumber: 7.3 Consensus size: 22
5332 TTTGAAAATG
*
5342 TGATAAGCTCTTTATGAAATTT
1 TGATAACCTCTTTATGAAATTT
5364 TGATAACCTCTTTAAT-AAATTT
1 TGATAACCTCTTT-ATGAAATTT
* * * * *
5386 TGCTGACCCCTCTATGAAATTC
1 TGATAACCTCTTTATGAAATTT
* * * *
5408 TGATAATCACATTATGTAATTT
1 TGATAACCTCTTTATGAAATTT
*
5430 TGATAACCTCGCTT-TGAAATTT
1 TGATAACCTC-TTTATGAAATTT
* *
5452 TGATAA--TCTTTCTAAAAATTT
1 TGATAACCTCTTTAT-GAAATTT
*
5473 TGATAATCCGATCTCTATGAAATTT
1 TGATAA-CC--TCTTTATGAAATTT
*
5498 CGATAA
1 TGATAA
5504 TCACTCTATA
Statistics
Matches: 106, Mismatches: 24, Indels: 17
0.72 0.16 0.12
Matches are distributed among these distances:
19 2 0.02
20 3 0.03
21 14 0.13
22 67 0.63
23 4 0.04
25 11 0.10
26 5 0.05
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.41
Consensus pattern (22 bp):
TGATAACCTCTTTATGAAATTT
Found at i:5705 original size:22 final size:22
Alignment explanation
Indices: 5673--5812 Score: 131
Period size: 22 Copynumber: 6.3 Consensus size: 22
5663 TTGTGATAAT
* *
5673 TAACCACCCTATGAAATTTCAA
1 TAACCATCCTATGAAATTTTAA
* * *
5695 TAACCAACCTAAGAGATTTTAA
1 TAACCATCCTATGAAATTTTAA
**
5717 TAACCTGATCCTATGAAATTTTGG
1 TAACC--ATCCTATGAAATTTTAA
*
5741 TAACCA-CACTATGAAATTTTGA
1 TAACCATC-CTATGAAATTTTAA
*
5763 TAACC-TCCTCATGAAATTATAA
1 TAACCATCCT-ATGAAATTTTAA
* *
5785 TAACCATCTTATGAAATTTTGA
1 TAACCATCCTATGAAATTTTAA
5807 TAACCA
1 TAACCA
5813 CATAGAGACA
Statistics
Matches: 97, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
21 3 0.03
22 74 0.76
23 3 0.03
24 17 0.18
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (22 bp):
TAACCATCCTATGAAATTTTAA
Found at i:5745 original size:46 final size:46
Alignment explanation
Indices: 5680--5768 Score: 108
Period size: 46 Copynumber: 1.9 Consensus size: 46
5670 AATTAACCAC
*
5680 CCTATGAAATTTCAATAACCA-ACCTAAGAGATTTTAATAACCTGAT
1 CCTATGAAATTTCAATAACCACA-CTAAGAAATTTTAATAACCTGAT
*** * *
5726 CCTATGAAATTTTGGTAACCACACTATGAAATTTTGATAACCT
1 CCTATGAAATTTCAATAACCACACTAAGAAATTTTAATAACCT
5769 CCTCATGAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
46 35 0.97
47 1 0.03
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (46 bp):
CCTATGAAATTTCAATAACCACACTAAGAAATTTTAATAACCTGAT
Found at i:5757 original size:68 final size:66
Alignment explanation
Indices: 5673--5814 Score: 169
Period size: 68 Copynumber: 2.1 Consensus size: 66
5663 TTGTGATAAT
* * *
5673 TAACCACCCTATGAAATTTCAATAACCAACCT-AAGAGATTTTAATAACCTGATCCTATGAAATT
1 TAACCACACTATGAAATTTCAATAACC-ACCTCAAGAAATTATAATAACC--ATCCTATGAAATT
*
5737 TTGG
63 TTGA
** * * *
5741 TAACCACACTATGAAATTTTGATAACCTCCTCATGAAATTATAATAACCATCTTATGAAATTTTG
1 TAACCACACTATGAAATTTCAATAACCACCTCAAGAAATTATAATAACCATCCTATGAAATTTTG
5806 A
66 A
5807 TAACCACA
1 TAACCACA
5815 TAGAGACAAG
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
66 23 0.36
67 3 0.05
68 38 0.59
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (66 bp):
TAACCACACTATGAAATTTCAATAACCACCTCAAGAAATTATAATAACCATCCTATGAAATTTTG
A
Found at i:6228 original size:37 final size:36
Alignment explanation
Indices: 6152--6228 Score: 111
Period size: 38 Copynumber: 2.1 Consensus size: 36
6142 AATTTAAGAC
*
6152 CAAAGACAAACCAAAATTAAATACAACGATTGGAAA
1 CAAAGACAAACAAAAATTAAATACAACGATTGGAAA
*
6188 CAAAGACAAACGGAAAAATTAAATAGAACG-TTGGAAA
1 CAAAGACAAAC--AAAAATTAAATACAACGATTGGAAA
6225 CAAA
1 CAAA
6229 AAGTCAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
36 11 0.30
37 11 0.30
38 15 0.41
ACGTcount: A:0.58, C:0.14, G:0.14, T:0.13
Consensus pattern (36 bp):
CAAAGACAAACAAAAATTAAATACAACGATTGGAAA
Found at i:6363 original size:31 final size:31
Alignment explanation
Indices: 6328--6393 Score: 107
Period size: 31 Copynumber: 2.1 Consensus size: 31
6318 TGGCAATTTA
*
6328 GAAATATGTTTTAAAGAA-AAGGGTACAATTG
1 GAAATATATTTTAAA-AATAAGGGTACAATTG
6359 GAAATATATTTTAAAAATAAGGGTACAATTG
1 GAAATATATTTTAAAAATAAGGGTACAATTG
6390 GAAA
1 GAAA
6394 ACATAAAGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
30 2 0.06
31 31 0.94
ACGTcount: A:0.48, C:0.03, G:0.20, T:0.29
Consensus pattern (31 bp):
GAAATATATTTTAAAAATAAGGGTACAATTG
Found at i:6549 original size:40 final size:40
Alignment explanation
Indices: 6505--6612 Score: 144
Period size: 40 Copynumber: 2.7 Consensus size: 40
6495 TACGAAATTA
*
6505 TGATAACATTTTTATTAAATTATGATAATTACACTATTTT
1 TGATAACATTTTTATGAAATTATGATAATTACACTATTTT
* *
6545 TGATAACCTTCTTATGAAATTATGATAATTACACTATTTT
1 TGATAACATTTTTATGAAATTATGATAATTACACTATTTT
* * * * *
6585 TTATGACGTCTTTATGAAATTTTGATAA
1 TGATAACATTTTTATGAAATTATGATAA
6613 CCTTCCTATG
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.35, C:0.09, G:0.08, T:0.47
Consensus pattern (40 bp):
TGATAACATTTTTATGAAATTATGATAATTACACTATTTT
Found at i:6622 original size:22 final size:22
Alignment explanation
Indices: 6597--6719 Score: 70
Period size: 22 Copynumber: 5.6 Consensus size: 22
6587 ATGACGTCTT
6597 TATGAAATTTTGATAACCTTCC
1 TATGAAATTTTGATAACCTTCC
** ** *
6619 TATGAAATTTCAATAACGATAC
1 TATGAAATTTTGATAACCTTCC
* * **
6641 TATGAAATTTCGAGAACCTTTT
1 TATGAAATTTTGATAACCTTCC
** * *
6663 TAT-AAATTTTTTTTAACCATCT
1 TATGAAA-TTTTGATAACCTTCC
*
6685 TATGAAATTTT-ATTAACCTCCC
1 TATGAAATTTTGA-TAACCTTCC
* *
6707 TAAGGAATTTTGA
1 TATGAAATTTTGA
6720 AGACCTCACT
Statistics
Matches: 74, Mismatches: 23, Indels: 7
0.71 0.22 0.07
Matches are distributed among these distances:
21 3 0.04
22 67 0.91
23 4 0.05
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTTCC
Found at i:6877 original size:22 final size:22
Alignment explanation
Indices: 6839--6898 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
6829 AAAACCTCCA
* *
6839 TATG-AATTGTCAGTAATTACAC
1 TATGAAATTGTGA-TAATCACAC
* * *
6861 TCTGAAATTTTGATAATCATAC
1 TATGAAATTGTGATAATCACAC
6883 TATGAAATTGTGATAA
1 TATGAAATTGTGATAA
6899 CCTCGCTATG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 24 0.80
23 6 0.20
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (22 bp):
TATGAAATTGTGATAATCACAC
Found at i:6998 original size:16 final size:18
Alignment explanation
Indices: 6955--7002 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 18
6945 ACTCCCTGTA
*
6955 AAATTTTGATAACCTCATG
1 AAATTTTGATAA-CTCATC
*
6974 AAATCTTGATAACT-A-C
1 AAATTTTGATAACTCATC
6990 AAATTTTGATAAC
1 AAATTTTGATAAC
7003 CTCCCTATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 12 0.46
17 1 0.04
18 2 0.08
19 11 0.42
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (18 bp):
AAATTTTGATAACTCATC
Found at i:7019 original size:22 final size:22
Alignment explanation
Indices: 6863--7177 Score: 163
Period size: 22 Copynumber: 14.5 Consensus size: 22
6853 AATTACACTC
* *
6863 TGAAATTTTGATAATCAT-ACTA
1 TGAAATTTTGATAA-CCTCCCTA
* *
6885 TGAAATTGTGATAACCTCGCTA
1 TGAAATTTTGATAACCTCCCTA
* * **
6907 TGATATTTTGATAAACCTTCAAA
1 TGAAATTTTGAT-AACCTCCCTA
* * *
6930 TAAAATTTTGATAAAACTCCCTG
1 TGAAATTTTGAT-AACCTCCCTA
*
6953 TAAAATTTTGATAACCT--C-A
1 TGAAATTTTGATAACCTCCCTA
*
6972 TGAAATCTTGATAA-----CTA
1 TGAAATTTTGATAACCTCCCTA
*
6989 -CAAATTTTGATAACCTCCCTA
1 TGAAATTTTGATAACCTCCCTA
** **
7010 TGATTTTTTGATAACCTCATTA
1 TGAAATTTTGATAACCTCCCTA
* *
7032 TGAAATTTTGTTAATCTCCCTA
1 TGAAATTTTGATAACCTCCCTA
* * *
7054 TGAAATTTTGATCTACAT-ACTA
1 TGAAATTTTGAT-AACCTCCCTA
* *
7076 TGAAATTTTGATAACCTTCTTA
1 TGAAATTTTGATAACCTCCCTA
* **
7098 TGAAATTTTGA-AAACTAAACTA
1 TGAAATTTTGATAACCT-CCCTA
* *
7120 TGAAATTTTGATAATTAACCTTCATA
1 TGAAATTTTG---A-TAACCTCCCTA
* *
7146 TGAAATTTTGATATCTTCCCTA
1 TGAAATTTTGATAACCTCCCTA
7168 --AAATTTTGAT
1 TGAAATTTTGAT
7178 TACTCCATAA
Statistics
Matches: 222, Mismatches: 54, Indels: 36
0.71 0.17 0.12
Matches are distributed among these distances:
16 12 0.05
17 1 0.00
19 12 0.05
20 11 0.05
21 12 0.05
22 120 0.54
23 37 0.17
25 1 0.00
26 12 0.05
27 4 0.02
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (22 bp):
TGAAATTTTGATAACCTCCCTA
Found at i:7309 original size:44 final size:44
Alignment explanation
Indices: 7258--7403 Score: 134
Period size: 44 Copynumber: 3.3 Consensus size: 44
7248 AGAAATACCA
* * *
7258 CTATGAAATTTTGGTAATCATATTTTGAAAATTTGATAACCTCT
1 CTATGAAATTTTGATAATCATATTATGAAAATTTGATAACCCCT
* * * *
7302 TTATGAAATTTTGATAA-CCTCTCTAT-AAAATTTTGTTAACCCCT
1 CTATGAAATTTTGATAATCATAT-TATGAAAA-TTTGATAACCCCT
* * * * * *
7346 CTATGAAATTTTGATAATCACATTATGTAATTTTGATAATCGCG
1 CTATGAAATTTTGATAATCATATTATGAAAATTTGATAACCCCT
*
7390 CTTTGAAATTTTGA
1 CTATGAAATTTTGA
7404 AATTGGATCA
Statistics
Matches: 80, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
43 7 0.09
44 69 0.86
45 4 0.05
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (44 bp):
CTATGAAATTTTGATAATCATATTATGAAAATTTGATAACCCCT
Found at i:7346 original size:24 final size:22
Alignment explanation
Indices: 7285--7362 Score: 104
Period size: 22 Copynumber: 3.6 Consensus size: 22
7275 TCATATTTTG
*
7285 AAAA-TTTGATAACCTCTTTAT
1 AAAATTTTGATAACCTCTCTAT
*
7306 GAAATTTTGATAACCTCTCTAT
1 AAAATTTTGATAACCTCTCTAT
* *
7328 AAAATTTTGTTAACCCCTCTAT
1 AAAATTTTGATAACCTCTCTAT
*
7350 GAAATTTTGATAA
1 AAAATTTTGATAA
7363 TCACATTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 3 0.06
22 46 0.94
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (22 bp):
AAAATTTTGATAACCTCTCTAT
Found at i:7372 original size:22 final size:22
Alignment explanation
Indices: 7259--7403 Score: 98
Period size: 22 Copynumber: 6.6 Consensus size: 22
7249 GAAATACCAC
* *
7259 TATGAAATTTTGGTAATCATAT
1 TATGAAATTTTGATAATCACAT
* * * * *
7281 TTTGAAAATTTGATAACCTCTT
1 TATGAAATTTTGATAATCACAT
* *
7303 TATGAAATTTTGATAACCTC-T
1 TATGAAATTTTGATAATCACAT
* * * *
7324 CTATAAAATTTTGTTAA-CCCCT
1 -TATGAAATTTTGATAATCACAT
7346 CTATGAAATTTTGATAATCACAT
1 -TATGAAATTTTGATAATCACAT
* * *
7369 TATGTAATTTTGATAATCGCGCT
1 TATGAAATTTTGATAATCAC-AT
7392 T-TGAAATTTTGA
1 TATGAAATTTTGA
7404 AATTGGATCA
Statistics
Matches: 99, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
21 3 0.03
22 91 0.92
23 5 0.05
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.43
Consensus pattern (22 bp):
TATGAAATTTTGATAATCACAT
Found at i:7509 original size:38 final size:37
Alignment explanation
Indices: 7450--7543 Score: 95
Period size: 38 Copynumber: 2.5 Consensus size: 37
7440 TGCTTCAGAT
* *
7450 ATAGGACATT-GAAGACGAAGACAAAA-AGCAAAA-TCAA
1 ATAGAACATTGGAA-ACAAAGACAAAAGA-CAAAACT-AA
*
7487 ATATAACAATTGGAAACAAAGACAAAAGACAAAACTAA
1 ATAGAAC-ATTGGAAACAAAGACAAAAGACAAAACTAA
*
7525 ATAGGACATTGGAAACAAA
1 ATAGAACATTGGAAACAAA
7544 AAGTCAAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
37 17 0.35
38 26 0.54
39 5 0.10
ACGTcount: A:0.59, C:0.13, G:0.16, T:0.13
Consensus pattern (37 bp):
ATAGAACATTGGAAACAAAGACAAAAGACAAAACTAA
Found at i:7536 original size:37 final size:37
Alignment explanation
Indices: 7450--7543 Score: 104
Period size: 37 Copynumber: 2.5 Consensus size: 37
7440 TGCTTCAGAT
*
7450 ATAGGACATT-GAAGACGAAGACAAAAAGCAAAATCAA
1 ATAGGACATTGGAA-ACAAAGACAAAAAGCAAAATCAA
**
7487 ATATAACAATTGGAAACAAAGAC-AAAAGACAAAA-CTAA
1 ATAGGAC-ATTGGAAACAAAGACAAAAAG-CAAAATC-AA
7525 ATAGGACATTGGAAACAAA
1 ATAGGACATTGGAAACAAA
7544 AAGTCAAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
37 23 0.48
38 22 0.46
39 3 0.06
ACGTcount: A:0.59, C:0.13, G:0.16, T:0.13
Consensus pattern (37 bp):
ATAGGACATTGGAAACAAAGACAAAAAGCAAAATCAA
Found at i:8038 original size:21 final size:21
Alignment explanation
Indices: 7995--8038 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7985 TAAAAAGGGG
*
7995 TTGCTAAATATCGCCCTAGTT
1 TTGCTAAATATCGCCCTACTT
8016 TTGCTAAATATCGTCCC-ACTT
1 TTGCTAAATATCG-CCCTACTT
8037 TT
1 TT
8039 TACACTTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.41
Consensus pattern (21 bp):
TTGCTAAATATCGCCCTACTT
Found at i:8057 original size:15 final size:16
Alignment explanation
Indices: 8036--8080 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
8026 TCGTCCCACT
*
8036 TTTTACACTTTTGCCC
1 TTTTACACTTTTACCC
8052 -TTTACA-TTTTACCC
1 TTTTACACTTTTACCC
8066 TTTTTACACTTTTAC
1 -TTTTACACTTTTAC
8081 ACTGAGCCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 7 0.28
15 6 0.24
16 6 0.24
17 6 0.24
ACGTcount: A:0.18, C:0.27, G:0.02, T:0.53
Consensus pattern (16 bp):
TTTTACACTTTTACCC
Found at i:11147 original size:17 final size:17
Alignment explanation
Indices: 11109--11141 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
11099 CTCATAGTAC
11109 CTAGGTAGTATGAGGTA
1 CTAGGTAGTATGAGGTA
11126 CTAGGTAGTATGAGGT
1 CTAGGTAGTATGAGGT
11142 GATAGGCTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.27, C:0.06, G:0.36, T:0.30
Consensus pattern (17 bp):
CTAGGTAGTATGAGGTA
Found at i:11727 original size:156 final size:154
Alignment explanation
Indices: 11493--11854 Score: 387
Period size: 156 Copynumber: 2.3 Consensus size: 154
11483 CTTCTCACCT
* *
11493 CAAACTGTCCTTAAATGAAAAACTAGCATAAGTTTTTCATTCTAAGTCTGAATGAGCTGAAATTT
1 CAAACTGTCCTTAAATGAAAAACTAGCATAAGTTTTTCATACTAAGTCTGAACGAGCTG-AATTT
* *
11558 TGCCAAGGAACTTAGAATATC-CACAT-AAGACTAT-GGAAAAAATTCTAAGTAAAACCGAGCTC
65 TGCCAAGGAACTTAGAATATCAC-CATAAAG-CTATGGGAAAAAA-TATAAGTAAAACCGAACTC
* * * *
11620 TACTTG-ATTGTGAACTAGGTTTCTCTCCC
127 T-CTAGCATAGAGAACT-GGTTTCACTCCC
** *
11649 CAAGTTGTCCTTAAATGAAAAACTAGCATAAGTTTTCCATACTAAGTCT-AACGAAGCTG-ATTT
1 CAAACTGTCCTTAAATGAAAAACTAGCATAAGTTTTTCATACTAAGTCTGAACG-AGCTGAATTT
* * * *
11712 T-CCACCAGTATACTTAGATTATCACCATAAAGCTATGGGGAAAAAATATAATTAAAACCGAATT
65 TGCCA--AGGA-ACTTAGAATATCACCATAAAGCTAT-GGGAAAAAATATAAGTAAAACCGAACT
* * *
11776 CTCTAGCATAGAGAAGTGGTTTGACTCCT
126 CTCTAGCATAGAGAACTGGTTTCACTCCC
* * *
11805 CAAACTGTCCTTAACTGAAAAACTAGCATAAATTTTTCATGCTAAGTCTG
1 CAAACTGTCCTTAAATGAAAAACTAGCATAAGTTTTTCATACTAAGTCTG
11855 TTTGAGATGA
Statistics
Matches: 172, Mismatches: 24, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
153 3 0.02
154 5 0.03
155 6 0.03
156 123 0.72
157 27 0.16
158 8 0.05
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (154 bp):
CAAACTGTCCTTAAATGAAAAACTAGCATAAGTTTTTCATACTAAGTCTGAACGAGCTGAATTTT
GCCAAGGAACTTAGAATATCACCATAAAGCTATGGGAAAAAATATAAGTAAAACCGAACTCTCTA
GCATAGAGAACTGGTTTCACTCCC
Found at i:14710 original size:18 final size:19
Alignment explanation
Indices: 14689--14725 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
14679 ATGAAGTGTG
14689 TGATTGAACGGTTA-AGAT
1 TGATTGAACGGTTAGAGAT
*
14707 TGATTGGACGGTTAGAGAT
1 TGATTGAACGGTTAGAGAT
14726 GGTGTTTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.30, C:0.05, G:0.32, T:0.32
Consensus pattern (19 bp):
TGATTGAACGGTTAGAGAT
Found at i:16692 original size:1 final size:1
Alignment explanation
Indices: 16686--16719 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
16676 AACTAGTGAT
* *
16686 AAAAAAAATAAAAAAAAAATAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
16720 CCTAGTAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.94, C:0.00, G:0.00, T:0.06
Consensus pattern (1 bp):
A
Found at i:16702 original size:11 final size:11
Alignment explanation
Indices: 16686--16719 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
16676 AACTAGTGAT
16686 AAAAAAAATAA
1 AAAAAAAATAA
16697 AAAAAAAATAA
1 AAAAAAAATAA
16708 AAAAAAAA-AA
1 AAAAAAAATAA
16718 AA
1 AA
16720 CCTAGTAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 4 0.17
11 19 0.83
ACGTcount: A:0.94, C:0.00, G:0.00, T:0.06
Consensus pattern (11 bp):
AAAAAAAATAA
Found at i:23698 original size:6 final size:6
Alignment explanation
Indices: 23678--23712 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
23668 GTGTGAAGAA
23678 TTTCCT TTT--T TTTCCT TTTCCT TTTCCT TTTCCT T
1 TTTCCT TTTCCT TTTCCT TTTCCT TTTCCT TTTCCT T
23713 CTCTCTCGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
6 23 0.85
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTCCT
Found at i:23967 original size:13 final size:13
Alignment explanation
Indices: 23943--23984 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
23933 GGATAGAATC
*
23943 AAATTAAAAAAATT
1 AAATT-AAAAAATA
23957 AAATTAAAAAATA
1 AAATTAAAAAATA
*
23970 AAAAT-AAAAATA
1 AAATTAAAAAATA
23982 AAA
1 AAA
23985 ATGGATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 10 0.38
13 11 0.42
14 5 0.19
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AAATTAAAAAATA
Found at i:23985 original size:13 final size:13
Alignment explanation
Indices: 23949--23986 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
23939 AATCAAATTA
* *
23949 AAAAAATTAAATT
1 AAAAAATAAAAAT
23962 AAAAAATAAAAAT
1 AAAAAATAAAAAT
23975 -AAAAATAAAAAT
1 AAAAAATAAAAAT
23987 GGATATAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:25599 original size:2 final size:2
Alignment explanation
Indices: 25592--25635 Score: 70
Period size: 2 Copynumber: 21.5 Consensus size: 2
25582 CTCATACTTT
*
25592 TA TA TA TA GTA TA GA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25635 T
1 T
25636 GTAAACTTCC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (2 bp):
TA
Found at i:26921 original size:11 final size:11
Alignment explanation
Indices: 26878--26915 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
26868 TTTCTATATA
*
26878 AAATAAATTAT
1 AAATTAATTAT
26889 CAAA-TAATTAT
1 -AAATTAATTAT
26900 AAATTAATTAT
1 AAATTAATTAT
26911 AAATT
1 AAATT
26916 TGTTATGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 3 0.12
11 18 0.75
12 3 0.12
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (11 bp):
AAATTAATTAT
Found at i:29018 original size:11 final size:11
Alignment explanation
Indices: 28975--29012 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
28965 TTCCTATATA
*
28975 AAATAAATTAT
1 AAATTAATTAT
28986 CAAA-TAATTAT
1 -AAATTAATTAT
28997 AAATTAATTAT
1 AAATTAATTAT
29008 AAATT
1 AAATT
29013 TGTTATGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 3 0.12
11 18 0.75
12 3 0.12
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (11 bp):
AAATTAATTAT
Found at i:30856 original size:6 final size:6
Alignment explanation
Indices: 30845--30878 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
30835 TCAAAATATA
30845 TTTATT TTTATT TTTATTT TTTATTT TTTATT TT
1 TTTATT TTTATT TTTA-TT TTTA-TT TTTATT TT
30879 ATAGATTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 14 0.52
7 13 0.48
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:30865 original size:7 final size:7
Alignment explanation
Indices: 30845--30878 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
30835 TCAAAATATA
30845 TTTA-TT
1 TTTATTT
30851 TTTA-TT
1 TTTATTT
30857 TTTATTT
1 TTTATTT
30864 TTTATTT
1 TTTATTT
30871 TTTATTT
1 TTTATTT
30878 T
1 T
30879 ATAGATTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 10 0.37
7 17 0.63
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTATTT
Found at i:30867 original size:13 final size:12
Alignment explanation
Indices: 30845--30878 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
30835 TCAAAATATA
30845 TTTATTTTTATT
1 TTTATTTTTATT
30857 TTTATTTTTTATTT
1 TTTA-TTTTTA-TT
30871 TTTATTTT
1 TTTATTTT
30879 ATAGATTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 10 0.50
14 6 0.30
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTATTTTTATT
Found at i:31400 original size:17 final size:17
Alignment explanation
Indices: 31380--31420 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
31370 AAAAACCTTT
31380 AAAGAAGAAAA-AAAGAA
1 AAAGAAGAAAAGAAA-AA
31397 AAAGAAGAAAAGAAAAA
1 AAAGAAGAAAAGAAAAA
31414 AAA-AAGA
1 AAAGAAGA
31421 TGAACAGGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.17
17 16 0.70
18 3 0.13
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAAGAAGAAAAGAAAAA
Found at i:31407 original size:14 final size:14
Alignment explanation
Indices: 31384--31418 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
31374 ACCTTTAAAG
31384 AAGAAAAAAAGAAA
1 AAGAAAAAAAGAAA
*
31398 AAGAAGAAAAGAAA
1 AAGAAAAAAAGAAA
31412 AA-AAAAA
1 AAGAAAAA
31419 GATGAACAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (14 bp):
AAGAAAAAAAGAAA
Found at i:32055 original size:157 final size:157
Alignment explanation
Indices: 31603--32146 Score: 654
Period size: 157 Copynumber: 3.5 Consensus size: 157
31593 ATTTAGACCA
* * * * *
31603 TCTTGGCTAAGTTTCATCTCAAACGGACTTA-AGATGAAAAACCTATGCATATTTTTCATTTAAG
1 TCTTGGCAAAGTTTCATCTCAATCAGACTTAGA-ATGAAAAACTTATGCATGTTTTTCATTTAAG
** * * * * * *
31667 GACAGTTTGGGGGTGTGAAACCACCTTCACTATGATAGG-GAGTTTGATTTTACTTATAATTTTT
65 GACAGTTTGGGGGTGTGAAACCAAGTTCACCATCA-AGGAGAGCTCGGTTTTACTTAGAATTTTT
* * *
31731 TCCATAGTTTTATGG-GATTAATCTAAGCC
129 TCCATAGTCTTGTGGAGA-TAATCTAAGTC
* * ** * *
31760 TACTGGTGG-AAA--ATCAACTTC-ATTGGGCTTAGAATGAAAAACTTATGCACGTTTTTCATTT
1 T-CT--TGGCAAAGTTTCATC-TCAATCAGACTTAGAATGAAAAACTTATGCATGTTTTTCATTT
* * * * * *
31821 AAGGACAGTTT-AGGGAGAGAAACCAAGTTCACCACCAAAGAGAGCTCGGTTTTACTTGGAATTT
62 AAGGACAGTTTGGGGGTGTGAAACCAAGTTCACCATCAAGGAGAGCTCGGTTTTACTTAGAATTT
*
31885 TTTCCATAATCTTGTGGAGATAATCTAAGTC
127 TTTCCATAGTCTTGTGGAGATAATCTAAGTC
*
31916 TCTTGGCAAAGTTTCATCTCAATCAGACTTAGAATGAAAAACTTATGCTTGTTTTTCATTTAAGG
1 TCTTGGCAAAGTTTCATCTCAATCAGACTTAGAATGAAAAACTTATGCATGTTTTTCATTTAAGG
*
31981 ACAGTTTGGGGGTGTGAAACCAAGTTCACCATCAAGGAGAGCTCGGTTTTACTTAGAATTTTCTC
66 ACAGTTTGGGGGTGTGAAACCAAGTTCACCATCAAGGAGAGCTCGGTTTTACTTAGAATTTTTTC
*
32046 CATAGTCTTGTGGAAATAATCTAAGTC
131 CATAGTCTTGTGGAGATAATCTAAGTC
* * *
32073 CCTTGGCAAAGTTTCATCTCAATCAAAGTTAGAATGAAAAACTTATGCATGTTTTTCATTTAAGG
1 TCTTGGCAAAGTTTCATCTCAATCAGACTTAGAATGAAAAACTTATGCATGTTTTTCATTTAAGG
32138 ACAGTTTGG
66 ACAGTTTGG
32147 TGTGTGCAGG
Statistics
Matches: 328, Mismatches: 47, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
153 3 0.01
154 3 0.01
155 6 0.02
156 111 0.34
157 195 0.59
158 5 0.02
159 2 0.01
160 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (157 bp):
TCTTGGCAAAGTTTCATCTCAATCAGACTTAGAATGAAAAACTTATGCATGTTTTTCATTTAAGG
ACAGTTTGGGGGTGTGAAACCAAGTTCACCATCAAGGAGAGCTCGGTTTTACTTAGAATTTTTTC
CATAGTCTTGTGGAGATAATCTAAGTC
Done.