Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007119.1 Corchorus capsularis cultivar CVL-1 contig07140, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41162

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1295--1375
2
40.0
2
78
11
76
53
2
1
43
1.22
3008--3063
2
27.5
2
85
10
78
48
0
5
46
1.25
5176--5207
2
16.0
2
100
0
64
50
0
0
50
1.00
6350--6389
18
2.2
19
86
4
55
32
10
12
45
1.75
9695--9747
27
2.0
27
81
7
63
24
7
5
62
1.44
12657--12718
30
2.1
30
93
0
106
24
20
4
50
1.68
31107--31144
2
19.0
2
100
0
76
0
50
0
50
1.00
34206--34232
7
3.9
7
100
0
54
88
0
11
0
0.50
36122--36154
14
2.5
13
90
9
50
72
3
18
6
1.18
36661--36694
2
17.0
2
100
0
68
50
0
0
50
1.00
38172--38209
19
2.0
19
94
0
67
21
7
31
39
1.82
39061--39085
6
4.2
6
100
0
50
16
16
0
68
1.22

Tables:   1

The End!