genome.fa.s7121.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007121.1 Corchorus capsularis cultivar CVL-1 contig07142, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19738

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178--255	32	2.4	32	97	0	147	15	43	29	11	1.82
293--355	33	1.9	33	87	6	92	12	34	39	12	1.82
358--448	33	2.8	31	75	11	85	12	40	32	14	1.83
3476--3562	43	2.0	43	93	0	147	27	12	20	39	1.89
8787--8841	27	2.0	27	85	0	74	16	3	14	65	1.41
9106--9206	13	7.6	13	66	30	54	27	41	14	15	1.87
9111--9227	26	4.5	26	79	11	132	29	40	15	15	1.88
9110--9227	53	2.2	52	89	7	177	29	39	15	15	1.88
12770--12909	50	2.8	51	86	2	210	18	35	25	20	1.96
13278--13347	13	5.4	13	67	29	51	27	42	14	15	1.86
13278--13394	26	4.5	26	77	11	114	29	38	15	17	1.90
13277--13394	53	2.2	52	88	7	168	29	38	15	16	1.90
16139--16375	110	2.2	110	87	2	343	21	21	22	33	1.97
16488--16595	29	3.8	29	73	10	114	28	28	14	27	1.96
16485--16607	56	2.1	60	86	7	173	29	27	16	26	1.97
16931--17032	50	2.1	49	86	1	141	22	12	26	38	1.90
16937--17043	50	2.2	50	82	1	126	23	14	26	35	1.94
17111--17379	45	5.9	45	69	9	161	27	25	17	29	1.98
17350--17402	20	2.7	19	82	5	61	18	30	22	28	1.98
17511--17620	45	2.4	45	83	4	123	27	26	18	28	1.98
17576--17760	54	3.3	55	84	5	203	29	22	16	31	1.96
17574--17771	57	3.6	55	84	4	213	28	23	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18263--18382	36	3.3	36	84	2	152	27	23	21	27	1.99
18544--18728	46	4.0	46	87	2	228	30	20	17	31	1.96

Tables:   1

The End!