Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007122.1 Corchorus capsularis cultivar CVL-1 contig07143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27963

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4144--4213
30
2.4
30
88
7
99
12
10
37
40
1.77
9330--9389
30
2.0
30
86
0
84
35
20
25
20
1.96
11071--11107
18
2.1
18
89
0
56
48
18
8
24
1.75
11222--11259
11
3.5
11
89
10
51
39
0
2
57
1.12
11550--11917
107
3.5
105
91
5
573
40
9
8
41
1.68
16230--16297
12
5.5
12
69
19
50
73
1
20
4
1.08
16218--16270
18
3.0
18
83
10
65
71
0
24
3
1.02
16236--16309
37
1.9
39
82
15
93
70
2
20
6
1.23
16948--17002
25
2.4
23
80
16
69
58
1
1
38
1.20
17283--17354
31
2.3
31
77
13
85
27
4
6
61
1.41
18708--18756
15
3.1
15
77
11
53
36
18
0
44
1.50
21246--21394
69
2.2
68
85
3
192
25
16
14
43
1.86
21285--21538
68
3.7
67
77
8
237
27
17
14
39
1.90
26445--26509
23
2.9
22
79
4
67
40
15
12
32
1.84
26402--26508
22
4.8
22
75
6
72
36
17
12
33
1.87
26604--26688
23
3.8
22
78
6
82
38
12
5
42
1.68
26655--26857
22
9.5
22
68
16
99
36
12
9
40
1.76
26847--26914
19
3.5
19
83
2
73
27
19
10
42
1.83
27020--27205
22
8.4
22
73
9
119
36
11
9
43
1.73
27020--27205
66
2.8
66
77
8
189
36
11
9
43
1.73
26992--27189
44
4.5
44
75
8
163
36
12
9
41
1.75
27154--27192
21
2.0
19
85
14
53
41
7
5
46
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27272--27326
22
2.5
23
85
11
80
40
14
3
41
1.63
27449--27567
22
5.3
22
75
8
89
40
20
8
31
1.82
27657--27721
31
2.1
31
86
8
89
46
3
18
32
1.65

Tables:   1

The End!