genome.fa.s7123.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007123.1 Corchorus capsularis cultivar CVL-1 contig07144, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20582

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84--117	13	2.6	13	80	0	50	35	0	5	58	1.22
254--298	21	2.1	21	88	8	65	17	33	11	37	1.85
514--662	32	4.6	32	80	5	147	12	36	38	13	1.82
733--846	33	3.5	33	78	13	103	14	41	33	11	1.81
908--1050	32	4.4	32	90	3	216	13	29	41	15	1.85
3384--3484	28	3.7	27	75	13	100	20	12	23	42	1.87
7721--7849	27	4.9	26	79	11	147	56	6	20	16	1.62
7716--7847	26	5.0	25	80	9	138	56	7	19	16	1.64
7716--7849	53	2.5	53	91	0	214	55	7	20	16	1.64
7928--8065	7	19.7	7	69	16	63	54	2	23	19	1.58
7924--8101	35	5.1	35	85	6	220	53	3	23	19	1.59
7963--8004	15	2.9	14	85	3	57	59	4	16	19	1.54
7924--8089	69	2.4	69	86	7	219	54	3	22	19	1.60
7924--8214	69	4.0	70	73	15	204	54	3	22	19	1.59
8117--8411	44	7.1	40	73	16	149	54	3	21	20	1.58
8165--8398	22	11.0	22	77	10	222	53	3	20	21	1.61
8219--8398	64	2.8	64	82	5	229	53	3	20	21	1.61
8381--8506	64	2.0	63	81	10	150	54	3	22	19	1.60
8457--8581	42	3.0	42	85	3	135	55	5	18	20	1.63
8508--8581	22	3.4	22	86	3	105	56	5	14	22	1.59
8534--8567	7	4.9	7	85	0	50	55	2	23	17	1.55
8585--8625	22	1.9	22	85	5	57	51	4	19	24	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8549--8616	35	1.9	36	87	3	102	48	5	19	26	1.71
15237--15269	17	1.9	17	93	0	57	33	15	9	42	1.78
15442--15483	3	14.3	3	95	5	77	66	0	0	33	0.92
17316--17385	34	2.1	34	100	0	140	24	28	8	38	1.85
19220--19259	21	1.9	21	100	0	80	50	20	5	25	1.68

Tables:   1

The End!