genome.fa.s7126.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007126.1 Corchorus capsularis cultivar CVL-1 contig07147, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34047

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--30	2	14.5	2	100	0	58	0	48	0	51	1.00
30--57	2	14.0	2	100	0	56	50	0	0	50	1.00
2526--2560	16	2.1	18	89	10	56	42	8	0	48	1.33
2904--3747	437	1.9	440	84	3	1139	43	18	12	26	1.85
6868--6893	2	13.0	2	100	0	52	50	0	0	50	1.00
9338--9366	13	2.1	14	93	6	51	20	20	10	48	1.79
10425--10769	175	2.0	175	94	0	600	28	16	31	22	1.96
10761--10855	42	2.3	42	83	7	115	27	33	28	10	1.90
11215--11255	14	3.1	14	90	10	61	63	4	0	31	1.15
11218--11273	14	4.0	15	78	19	59	66	1	1	30	1.12
11267--11291	11	2.3	11	100	0	50	48	0	0	52	1.00
11304--11336	13	2.6	13	90	4	50	33	3	12	51	1.54
15326--15361	19	1.9	18	88	5	54	41	2	22	33	1.68
18510--18662	37	4.2	37	94	2	247	28	22	10	39	1.87
18655--18902	37	6.8	37	85	5	319	24	28	7	39	1.83
18674--18888	69	3.0	69	86	6	313	24	28	7	39	1.82
18656--18902	106	2.3	106	85	4	307	24	28	7	39	1.82
19053--19562	76	6.7	75	92	2	840	24	20	10	45	1.82
19052--19562	227	2.2	227	94	0	887	24	19	10	45	1.82
19578--19865	37	7.8	37	91	0	425	23	20	10	45	1.81
19864--19980	41	2.9	40	84	5	164	28	20	9	41	1.83
19944--20013	33	2.1	33	100	0	140	22	20	14	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20135--20218	40	2.2	38	80	8	89	28	14	8	48	1.72
23652--23701	26	1.9	26	83	0	64	18	20	12	50	1.78
30570--30657	42	2.2	40	83	8	106	26	34	29	10	1.89
32647--32698	21	2.5	21	80	0	59	9	34	26	28	1.88

Tables:   1

The End!