Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007128.1 Corchorus capsularis cultivar CVL-1 contig07149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86184

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68--109
14
2.7
15
82
14
50
54
2
26
16
1.54
396--444
17
2.9
16
85
8
62
22
20
22
34
1.97
1794--1960
22
7.6
22
77
9
171
35
11
12
40
1.79
1794--2024
44
5.2
44
82
5
243
35
11
13
38
1.81
1794--2020
66
3.4
66
78
8
196
36
11
13
38
1.82
1813--2006
22
8.7
22
77
9
144
35
12
12
39
1.81
1794--2024
22
10.4
22
70
15
127
35
11
13
38
1.81
1833--2024
90
2.2
88
82
3
242
35
12
13
38
1.83
2076--2132
22
2.6
22
83
5
62
35
12
12
40
1.80
2532--2752
22
10.3
22
69
7
125
35
10
17
37
1.84
2788--2829
22
1.9
22
85
0
57
42
7
14
35
1.73
5270--5320
2
25.5
2
100
0
102
50
49
0
0
1.00
7456--7580
62
2.0
63
95
1
225
25
16
13
44
1.84
9615--9642
10
2.8
10
100
0
56
42
35
21
0
1.53
13688--13735
2
23.5
2
87
8
62
52
0
4
43
1.20
33484--33518
16
2.2
16
90
10
54
51
5
0
42
1.25
36024--36155
60
2.2
60
82
2
158
37
13
15
32
1.87
36192--36271
31
2.6
31
89
0
124
21
17
18
42
1.89
51420--51781
157
2.3
155
79
8
369
35
19
15
29
1.92
53999--54043
21
2.1
21
84
8
56
31
17
26
24
1.97
54852--54903
21
2.5
21
93
0
86
42
9
26
21
1.83
62273--62365
11
7.1
14
65
22
58
33
2
8
55
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62304--62371
26
2.6
26
86
9
102
33
1
10
54
1.43
64954--64983
3
9.7
3
92
7
51
33
0
0
66
0.92
70984--71075
17
5.7
16
74
18
84
14
9
39
36
1.79
70997--71086
32
2.8
32
88
5
121
15
7
36
40
1.76
71223--71286
16
4.0
16
81
0
74
9
9
28
53
1.64
72708--72808
48
2.1
50
83
7
127
45
3
7
42
1.52
74283--74309
2
13.5
2
100
0
54
51
0
0
48
1.00
82350--82439
45
2.0
45
95
0
162
33
20
22
24
1.97
83763--83810
23
2.1
23
100
0
96
47
4
8
39
1.53
84019--84100
30
2.6
33
81
14
102
31
13
15
39
1.87

Tables:   1

The End!