Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007129.1 Corchorus capsularis cultivar CVL-1 contig07150, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 28266
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:6761 original size:31 final size:31

Alignment explanation


    Indices: 6725--6786  Score: 115
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       6715 AGACATAATA

                                           
       6725 AACCAAATATGCACACGACTAAACATATCTT
          1 AACCAAATATGCACACGACTAAACATATCTT

                       *                   
       6756 AACCAAATATGTACACGACTAAACATATCTT
          1 AACCAAATATGCACACGACTAAACATATCTT

       6787 GTGTCCATAG


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.45, C:0.24, G:0.06, T:0.24


Consensus pattern (31 bp):   
AACCAAATATGCACACGACTAAACATATCTT

Found at i:23034 original size:2 final size:2

Alignment explanation


    Indices: 23027--23060  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

      23017 TTACTGTTTA

                                                              
      23027 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

      23061 TAGTTAAGAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.