Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000713.1 Corchorus capsularis cultivar CVL-1 contig00713, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4823
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:3764 original size:6 final size:6

Alignment explanation


    Indices: 3753--3779  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       3743 TGGGTTTAAG

                                           
       3753 TATATC TATATC TATATC TATATC TAT
          1 TATATC TATATC TATATC TATATC TAT

       3780 CTTATCTTAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52


Consensus pattern (6 bp):   
TATATC

Found at i:4680 original size:21 final size:21

Alignment explanation


    Indices: 4654--4697  Score: 79
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       4644 TCTATGGGGG

                                 
       4654 TTGCTAAATACCGCCCTAGTT
          1 TTGCTAAATACCGCCCTAGTT

                              *  
       4675 TTGCTAAATACCGCCCTATTT
          1 TTGCTAAATACCGCCCTAGTT

              
       4696 TT
          1 TT

       4698 TACACTTTTG


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.23, C:0.27, G:0.11, T:0.39


Consensus pattern (21 bp):   
TTGCTAAATACCGCCCTAGTT
Done.