Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007131.1 Corchorus capsularis cultivar CVL-1 contig07152, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28317

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--77
31
2.4
33
93
4
131
10
41
36
11
1.76
1046--1111
32
2.1
32
88
0
96
7
9
27
56
1.58
1046--1111
16
4.1
16
82
0
78
7
9
27
56
1.58
4585--4704
33
3.7
33
75
4
136
31
18
18
31
1.95
8903--9247
22
15.8
22
70
9
107
38
14
9
37
1.79
8899--9020
41
2.9
43
81
4
149
39
14
7
38
1.74
8899--9197
44
6.9
43
73
11
164
37
13
10
38
1.79
9138--9246
44
2.5
44
89
3
157
42
13
11
33
1.80
9117--9243
66
1.9
66
82
3
157
40
12
12
34
1.81
10698--10748
11
4.8
10
81
13
66
41
0
0
58
0.98
10700--10747
14
3.3
15
86
13
66
39
0
0
60
0.97
10698--10747
8
6.9
8
80
19
65
40
0
0
60
0.97
11763--11834
29
2.4
29
84
11
85
38
30
12
18
1.87
12698--12815
34
3.5
34
95
0
200
27
15
29
27
1.96
15327--15373
24
2.0
24
86
0
67
27
25
10
36
1.89
19894--20465
41
13.9
41
76
13
378
38
19
27
14
1.91
19937--20600
41
15.5
44
76
14
345
38
19
26
15
1.92
19934--20384
88
5.4
88
81
10
475
37
19
28
14
1.91
20195--20255
32
1.9
32
89
0
95
36
24
26
13
1.92
20049--20302
79
3.1
79
86
9
323
37
19
27
14
1.92
20311--20462
39
3.8
40
86
6
202
40
21
25
13
1.89
20311--20462
78
1.9
80
88
6
229
40
21
25
13
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20434--20633
48
4.1
48
85
5
251
39
19
23
18
1.93

Tables:   1

The End!