Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007132.1 Corchorus capsularis cultivar CVL-1 contig07153, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32690

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1114--1173
6
9.3
6
77
15
50
76
1
20
1
0.96
1134--1198
26
2.6
25
78
7
69
80
6
10
3
1.01
2589--2705
56
2.1
56
98
0
225
26
16
16
41
1.89
2765--2805
21
2.0
21
95
4
75
9
14
14
60
1.57
3696--3735
2
20.0
2
100
0
80
50
0
0
50
1.00
4012--4041
11
2.7
11
94
0
51
80
16
3
0
0.85
7735--7767
6
5.5
6
100
0
66
0
48
18
33
1.48
8176--8225
24
2.1
24
88
7
75
22
38
4
36
1.73
9714--10097
197
1.9
197
98
0
741
31
26
11
30
1.91
13722--13802
33
2.4
35
84
12
107
18
19
7
54
1.67
16990--17022
6
5.5
6
96
0
57
45
0
18
36
1.49
24202--24258
30
1.9
30
92
0
96
42
15
19
22
1.89
24488--25388
438
2.1
434
80
6
1026
42
14
13
29
1.84
32270--32489
109
2.0
109
91
0
359
37
8
9
44
1.68
32598--32632
17
2.0
18
94
5
63
51
0
17
31
1.45
32631--32660
7
4.3
7
100
0
60
43
0
0
56
0.99

Tables:   1

The End!