Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007135.1 Corchorus capsularis cultivar CVL-1 contig07156, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42982

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6024--6056
16
2.1
16
100
0
66
45
12
24
18
1.83
6150--6391
41
5.9
41
86
4
290
37
19
13
30
1.89
6160--6391
85
2.8
82
83
5
279
37
19
12
29
1.89
9074--9292
41
5.3
41
89
3
276
37
17
13
31
1.89
9084--9292
85
2.5
82
84
4
265
38
17
13
30
1.88
9602--9639
12
3.3
12
82
14
53
65
5
21
7
1.38
18342--21868
932
3.8
933
91
2
5380
30
20
16
33
1.94
26573--26611
20
2.0
20
84
0
51
74
2
7
15
1.15
28226--28253
9
3.1
9
100
0
56
42
0
35
21
1.53
28269--28589
109
2.9
109
95
2
552
34
5
16
43
1.72
30324--30450
16
7.9
16
75
6
123
8
22
37
32
1.84
30327--30450
32
3.9
32
87
2
169
8
21
37
31
1.84
30314--30450
48
2.9
47
76
14
136
8
21
36
33
1.83
31299--31385
45
1.9
45
97
0
165
36
24
5
33
1.79
32720--32754
11
3.1
11
87
4
52
0
2
28
68
1.04
32892--33190
151
2.0
151
90
1
474
18
12
20
48
1.79
34015--34098
42
2.0
43
88
2
125
42
10
15
30
1.81
42659--42818
80
2.0
80
81
2
187
32
11
16
40
1.84

Tables:   1

The End!