Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007138.1 Corchorus capsularis cultivar CVL-1 contig07159, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44940

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3746--3813
31
2.2
31
86
5
93
50
8
16
25
1.73
3849--4051
105
1.9
108
87
4
304
52
6
15
25
1.67
3849--4051
54
3.8
53
80
8
209
52
6
15
25
1.67
3856--4051
109
1.8
103
86
4
257
52
6
15
25
1.66
4274--4593
43
7.7
42
74
14
238
56
6
19
17
1.62
4269--4368
21
4.5
23
70
17
95
57
5
17
21
1.59
4338--4606
21
12.7
22
69
16
133
57
6
19
16
1.61
4335--4606
22
12.9
21
72
15
161
56
6
19
16
1.61
4441--4545
38
2.6
41
85
13
130
60
6
18
14
1.54
9282--9322
19
2.2
19
100
0
82
21
31
26
19
1.97
9472--9516
23
2.0
23
86
8
65
8
11
0
80
0.92
10858--10905
24
2.0
24
100
0
96
33
25
12
29
1.92
11462--11522
32
1.9
32
86
0
86
59
16
11
13
1.62
14606--14730
24
5.2
23
64
27
64
20
16
13
50
1.78
14593--14764
48
3.6
48
97
0
317
18
16
12
51
1.76
22533--22742
104
2.0
104
95
0
375
34
10
15
40
1.81
25016--25052
19
1.9
19
100
0
74
27
32
10
29
1.90
28992--29145
84
1.8
83
90
1
245
22
19
20
38
1.94
32423--32530
54
2.0
54
94
0
189
34
16
9
39
1.81
32841--32878
20
2.0
20
89
5
60
5
15
13
65
1.43
33432--33475
7
6.4
7
89
5
72
2
15
0
81
0.78
33427--33473
13
3.5
13
88
5
67
2
17
0
80
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34532--34639
54
2.0
54
94
0
189
34
16
9
39
1.81
38019--38061
11
3.8
11
84
3
50
79
13
4
2
1.00
38019--38060
17
2.4
18
80
7
52
80
11
4
2
0.95
38857--39026
93
1.8
93
92
0
286
32
12
1
53
1.48
39481--39544
31
2.1
31
100
0
128
29
9
20
40
1.84
44914--44940
1
27.0
1
100
0
54
100
0
0
0
0.00

Tables:   1

The End!