Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000714.1 Corchorus capsularis cultivar CVL-1 contig00714, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1997
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33


Found at i:1723 original size:25 final size:23

Alignment explanation


    Indices: 1677--1725  Score: 71
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1667 CTCTTAATGA

                             *     
       1677 TTATCATTTTTACTTTTGTTACT
          1 TTATCATTTTTACTTTTCTTACT

                                     
       1700 TTATCATTTTTACTCTTTCCTTACT
          1 TTATCATTTTTACT-TTT-CTTACT

             
       1725 T
          1 T

       1726 CCCTTTTACT


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  23   14  0.61
  24    3  0.13
  25    6  0.26

ACGTcount: A:0.16, C:0.18, G:0.02, T:0.63


Consensus pattern (23 bp):   
TTATCATTTTTACTTTTCTTACT

Found at i:1954 original size:14 final size:14

Alignment explanation


    Indices: 1930--1974  Score: 56
    Period size: 14  Copynumber: 3.3  Consensus size: 14

       1920 CTTGCCATCT

                          
       1930 TTACT-TTTACTGA
          1 TTACTCTTTACTGA

                        **
       1943 TTACTCTTTACTTT
          1 TTACTCTTTACTGA

              *           
       1957 TTCCTCTTTACTGA
          1 TTACTCTTTACTGA

                
       1971 TTAC
          1 TTAC

       1975 CATTTTACCC


Statistics
Matches: 25,  Mismatches: 6, Indels: 1
        0.78            0.19        0.03

Matches are distributed among these distances:
  13    5  0.20
  14   20  0.80

ACGTcount: A:0.18, C:0.22, G:0.04, T:0.56


Consensus pattern (14 bp):   
TTACTCTTTACTGA
Done.