Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007140.1 Corchorus capsularis cultivar CVL-1 contig07161, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74211

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--35
2
17.5
2
100
0
70
48
0
0
51
1.00
17934--18000
28
2.4
28
84
0
89
5
13
20
59
1.55
20038--20078
21
2.0
21
95
0
73
31
19
14
34
1.92
20105--20187
41
2.0
41
97
0
157
32
15
26
25
1.96
32083--32121
19
2.1
19
85
0
51
25
20
25
28
1.99
40559--40657
49
2.0
49
100
0
198
30
10
6
53
1.58
47219--47381
60
2.7
60
89
1
229
36
18
18
26
1.94
47215--47411
31
6.5
31
67
13
106
37
17
18
27
1.93
47456--47555
31
3.3
31
73
10
107
23
17
22
38
1.93
47480--47568
29
3.0
29
70
12
90
26
15
22
34
1.94
47456--47612
60
2.7
57
88
3
224
26
16
19
36
1.93
48920--48957
16
2.4
16
86
8
51
2
21
0
76
0.91
63871--63901
16
1.9
16
93
0
53
35
9
0
54
1.33
64441--64477
18
2.1
18
100
0
74
37
5
10
45
1.62
71198--71244
22
2.1
23
84
4
60
42
19
2
36
1.63
72715--72750
19
1.9
18
88
5
54
41
0
22
36
1.54

Tables:   1

The End!