Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007142.1 Corchorus capsularis cultivar CVL-1 contig07163, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39990

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4726--4761
13
2.7
13
95
4
63
52
11
5
30
1.59
5616--5862
107
2.3
107
87
0
359
41
7
9
41
1.67
6750--6809
31
1.9
31
93
6
104
30
20
3
46
1.66
7264--7371
22
5.0
21
81
4
99
35
12
15
37
1.85
7544--7850
22
13.8
21
70
17
133
40
9
16
34
1.81
7621--7850
22
10.4
23
74
11
135
41
9
15
33
1.80
7682--7866
44
4.2
44
74
4
162
43
8
14
33
1.76
7703--7850
66
2.2
66
79
2
154
40
9
15
34
1.80
7888--8513
22
29.0
21
68
14
215
39
10
15
35
1.81
8121--8227
45
2.4
44
80
10
126
39
9
14
36
1.79
8481--8528
22
2.2
22
81
7
53
50
8
10
31
1.66
9025--9112
45
2.0
45
95
0
158
46
14
4
34
1.65
9025--9096
12
6.2
12
69
16
53
48
13
2
34
1.57
11756--11817
2
32.0
2
81
18
78
51
0
3
45
1.17
11754--11820
21
2.9
23
89
10
102
50
0
4
44
1.22
12107--12161
26
2.1
26
83
12
69
34
0
1
63
1.05
12107--12162
29
2.0
26
86
10
76
33
0
1
64
1.04
12062--12201
20
6.8
19
69
22
79
32
0
5
62
1.16
12037--12179
67
2.1
67
89
5
218
34
0
3
62
1.12
12128--12201
19
3.8
19
76
13
71
33
0
5
60
1.19
18432--18466
15
2.3
15
95
0
61
17
28
14
40
1.88
18446--18502
24
2.4
24
85
5
71
19
28
14
38
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25546--25600
2
30.5
2
76
20
59
45
1
0
52
1.11
25549--25600
5
9.8
5
89
8
61
44
1
0
53
1.11
25546--25600
10
5.1
11
85
12
71
45
1
0
52
1.11
27634--27662
2
14.5
2
100
0
58
48
0
0
51
1.00
28026--28075
15
3.2
16
76
18
61
50
2
44
4
1.32
29368--29403
4
9.0
4
100
0
72
75
0
25
0
0.81
35204--35367
12
14.0
12
81
10
169
14
28
21
36
1.92
35252--35338
43
2.0
43
88
4
131
13
28
19
37
1.90
35239--35350
55
2.0
56
89
5
174
14
28
20
36
1.92
35225--35360
67
2.0
68
92
4
231
13
29
20
36
1.92
38375--38441
24
2.8
24
79
0
89
22
46
13
17
1.83

Tables:   1

The End!