genome.fa.s7143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007143.1 Corchorus capsularis cultivar CVL-1 contig07164, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56075

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2911--3013	5	22.6	5	75	18	73	22	22	0	55	1.44
2959--2999	8	4.9	8	82	11	55	24	19	0	56	1.42
2956--3013	26	2.2	26	87	6	91	22	18	0	58	1.39
4907--4961	22	2.5	22	81	0	65	45	12	14	27	1.81
4909--5015	22	4.9	22	72	11	58	40	11	14	33	1.82
5068--5167	22	4.6	21	74	9	67	42	6	13	39	1.68
5133--5180	22	2.2	22	84	0	60	37	12	10	39	1.77
5178--5267	31	2.9	31	84	1	126	27	14	17	40	1.89
5187--5325	31	4.5	32	79	13	116	25	15	14	44	1.84
5249--5322	29	2.5	28	84	8	85	21	17	13	47	1.82
11151--11185	1	35.0	1	94	0	52	94	0	0	5	0.32
12794--12916	61	2.0	61	100	0	246	38	6	9	45	1.63
13319--13360	22	1.9	22	90	9	68	30	0	2	66	1.04
23714--23761	20	2.4	20	86	6	62	58	12	4	25	1.52
25282--25388	33	3.2	32	81	5	126	15	32	36	14	1.89
25351--25454	33	3.2	33	83	5	104	14	35	32	17	1.90
25274--25432	66	2.4	65	78	13	157	15	31	35	17	1.91
25552--25623	11	5.4	15	66	25	54	31	1	12	54	1.47
25556--25623	26	2.6	26	95	0	118	33	1	11	52	1.47
25762--25806	21	2.1	21	95	0	81	31	8	42	17	1.80
28177--28463	154	1.9	151	82	11	334	52	3	9	34	1.51
29878--29912	8	4.4	8	100	0	70	37	0	25	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34845--34912	34	2.0	35	83	13	88	33	8	19	38	1.82
34761--35020	104	2.5	105	88	0	396	29	16	18	35	1.93
40513--40580	34	2.0	35	83	13	88	33	8	19	38	1.82
40426--40688	104	2.5	105	88	0	402	29	16	18	35	1.93
41776--41875	48	2.1	49	92	1	166	47	9	13	31	1.73
45654--45694	21	2.0	21	95	0	73	39	9	19	31	1.84
49832--50106	58	4.7	58	86	4	403	27	34	20	17	1.95
49836--50139	58	5.2	57	82	8	278	29	33	20	17	1.95
49836--50139	116	2.6	115	83	8	382	29	33	20	17	1.95
50163--50240	28	2.8	28	96	0	138	46	23	12	17	1.83
50602--50802	29	6.9	29	90	1	287	30	26	19	22	1.98
50602--50802	87	2.3	88	91	1	325	30	26	19	22	1.98
50940--51433	29	18.2	28	78	11	441	26	28	23	21	1.99
50962--51452	53	9.1	53	82	8	414	26	28	24	21	1.99
50947--51420	79	5.9	78	81	9	414	26	28	23	21	1.99
50962--51249	103	2.7	103	88	3	414	26	28	23	21	1.99
51603--51639	19	1.9	19	100	0	74	27	27	27	18	1.98
51622--51696	28	2.7	28	87	0	105	32	30	24	13	1.93
51676--51716	19	2.2	19	90	0	64	41	24	21	12	1.87

Tables:   1

The End!