Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01007147.1 Corchorus capsularis cultivar CVL-1 contig07168, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33091
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:12818 original size:2 final size:2
Alignment explanation
Indices: 12811--12855 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
12801 TCCAATGTCT
* * *
12811 TA TA TA TA CA TA TA TA CA TA TA CA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
12853 TA T
1 TA T
12856 TGATAAAGAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (2 bp):
TA
Found at i:18673 original size:17 final size:17
Alignment explanation
Indices: 18651--18683 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18641 ATATGTGTTC
18651 TCTTCGGAACTAGATTT
1 TCTTCGGAACTAGATTT
18668 TCTTCGGAACTAGATT
1 TCTTCGGAACTAGATT
18684 GAAATATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (17 bp):
TCTTCGGAACTAGATTT
Found at i:22868 original size:21 final size:21
Alignment explanation
Indices: 22844--22883 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22834 TTGTTGTTAT
*
22844 TCTTCTTCTCCTTGTCGTTCC
1 TCTTCTTCTCCTTCTCGTTCC
*
22865 TCTTCTTCTTCTTCTCGTT
1 TCTTCTTCTCCTTCTCGTT
22884 ATTCTCCTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.00, C:0.35, G:0.07, T:0.57
Consensus pattern (21 bp):
TCTTCTTCTCCTTCTCGTTCC
Found at i:22927 original size:18 final size:18
Alignment explanation
Indices: 22904--22939 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
22894 CTCTAACTGG
*
22904 TTCTCGTTATTCTTCTTC
1 TTCTCGTTATTCTCCTTC
22922 TTCTCGTTATTCTCCTTC
1 TTCTCGTTATTCTCCTTC
22940 CTCTAACTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.06, C:0.31, G:0.06, T:0.58
Consensus pattern (18 bp):
TTCTCGTTATTCTCCTTC
Found at i:22929 original size:46 final size:46
Alignment explanation
Indices: 22867--22956 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
22857 GTCGTTCCTC
22867 TTCTTCTTCTTCTCGTTATTCTCCTTCCTCTAACTGGTTCTCGTTA
1 TTCTTCTTCTTCTCGTTATTCTCCTTCCTCTAACTGGTTCTCGTTA
22913 TTCTTCTTCTTCTCGTTATTCTCCTTCCTCTAACTGGTTCTCGT
1 TTCTTCTTCTTCTCGTTATTCTCCTTCCTCTAACTGGTTCTCGT
22957 CTTCCTCTAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.08, C:0.31, G:0.09, T:0.52
Consensus pattern (46 bp):
TTCTTCTTCTTCTCGTTATTCTCCTTCCTCTAACTGGTTCTCGTTA
Found at i:23236 original size:91 final size:91
Alignment explanation
Indices: 23081--23265 Score: 370
Period size: 91 Copynumber: 2.0 Consensus size: 91
23071 GTTATGGCCC
23081 CAAGAGTGTTGAGATTGCGAACGAGATGAACGCGATTGAGACCCTTTTGATTAATGATCATTTGA
1 CAAGAGTGTTGAGATTGCGAACGAGATGAACGCGATTGAGACCCTTTTGATTAATGATCATTTGA
23146 TTCGGTGTAATGATATCTCATTGAGG
66 TTCGGTGTAATGATATCTCATTGAGG
23172 CAAGAGTGTTGAGATTGCGAACGAGATGAACGCGATTGAGACCCTTTTGATTAATGATCATTTGA
1 CAAGAGTGTTGAGATTGCGAACGAGATGAACGCGATTGAGACCCTTTTGATTAATGATCATTTGA
23237 TTCGGTGTAATGATATCTCATTGAGG
66 TTCGGTGTAATGATATCTCATTGAGG
23263 CAA
1 CAA
23266 AAGAACATGG
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 94 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (91 bp):
CAAGAGTGTTGAGATTGCGAACGAGATGAACGCGATTGAGACCCTTTTGATTAATGATCATTTGA
TTCGGTGTAATGATATCTCATTGAGG
Found at i:26193 original size:28 final size:28
Alignment explanation
Indices: 26161--26216 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
26151 TAACTTAGAC
* * * *
26161 TTTAAAATATTTGATGGATTGCTCATTG
1 TTTAAAATAGTTAATAGATGGCTCATTG
26189 TTTAAAATAGTTAATAGATGGCTCATTG
1 TTTAAAATAGTTAATAGATGGCTCATTG
26217 ATTTTATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (28 bp):
TTTAAAATAGTTAATAGATGGCTCATTG
Found at i:27776 original size:48 final size:48
Alignment explanation
Indices: 27724--27839 Score: 155
Period size: 48 Copynumber: 2.4 Consensus size: 48
27714 GAACTCTCCT
* * *
27724 CATTGATTCTCTTTATTCGTTCCATTAGAACTCCCAAATCCAAAACCC
1 CATTGCTTCTCTTTCTTCGATCCATTAGAACTCCCAAATCCAAAACCC
* * *
27772 CATTGCTTCAT-TTTCTTCAATCCCTTAGAACTCCCAAATCTAAAACCC
1 CATTGCTTC-TCTTTCTTCGATCCATTAGAACTCCCAAATCCAAAACCC
27820 CATTGCTTC-CTTTCTTCGAT
1 CATTGCTTCTCTTTCTTCGAT
27840 GCCTCTACCA
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
47 9 0.15
48 49 0.83
49 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.06, T:0.36
Consensus pattern (48 bp):
CATTGCTTCTCTTTCTTCGATCCATTAGAACTCCCAAATCCAAAACCC
Found at i:28467 original size:29 final size:29
Alignment explanation
Indices: 28425--28484 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
28415 AGTGATTTTT
* **
28425 TTTAATATAATTTTCTTAAAATCAGAAAA
1 TTTAACATAATTTTAATAAAATCAGAAAA
*
28454 TTTAACATGATTTTAATAAAATCAGAAAA
1 TTTAACATAATTTTAATAAAATCAGAAAA
28483 TT
1 TT
28485 CCACGCTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (29 bp):
TTTAACATAATTTTAATAAAATCAGAAAA
Found at i:28912 original size:21 final size:19
Alignment explanation
Indices: 28887--28984 Score: 97
Period size: 21 Copynumber: 4.9 Consensus size: 19
28877 GCTGCTCTAA
*
28887 TAATCTCATCTGTACAGTACC
1 TAATCTAATCTGTACAGT--C
*
28908 TAATCTAATCTGTACAGTG
1 TAATCTAATCTGTACAGTC
* *
28927 TATTCTTATCTGTACAGTACC
1 TAATCTAATCTGTACAGT--C
*
28948 TAATCTAATCTGTACAGTG
1 TAATCTAATCTGTACAGTC
* *
28967 TATTCTCATCTGTACAGT
1 TAATCTAATCTGTACAGT
28985 TGCTAAACAG
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
19 32 0.49
21 33 0.51
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (19 bp):
TAATCTAATCTGTACAGTC
Found at i:28938 original size:40 final size:40
Alignment explanation
Indices: 28890--28984 Score: 181
Period size: 40 Copynumber: 2.4 Consensus size: 40
28880 GCTCTAATAA
28890 TCTCATCTGTACAGTACCTAATCTAATCTGTACAGTGTAT
1 TCTCATCTGTACAGTACCTAATCTAATCTGTACAGTGTAT
*
28930 TCTTATCTGTACAGTACCTAATCTAATCTGTACAGTGTAT
1 TCTCATCTGTACAGTACCTAATCTAATCTGTACAGTGTAT
28970 TCTCATCTGTACAGT
1 TCTCATCTGTACAGT
28985 TGCTAAACAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (40 bp):
TCTCATCTGTACAGTACCTAATCTAATCTGTACAGTGTAT
Found at i:28939 original size:19 final size:19
Alignment explanation
Indices: 28911--28984 Score: 94
Period size: 19 Copynumber: 3.8 Consensus size: 19
28901 CAGTACCTAA
28911 TCTAATCTGTACAGTGTAT
1 TCTAATCTGTACAGTGTAT
* * *
28930 TCTTATCTGTACAGTACCTAA
1 TCTAATCTGTACAGT--GTAT
28951 TCTAATCTGTACAGTGTAT
1 TCTAATCTGTACAGTGTAT
*
28970 TCTCATCTGTACAGT
1 TCTAATCTGTACAGT
28985 TGCTAAACAG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
19 30 0.65
21 16 0.35
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.41
Consensus pattern (19 bp):
TCTAATCTGTACAGTGTAT
Found at i:31819 original size:22 final size:22
Alignment explanation
Indices: 31793--31889 Score: 71
Period size: 22 Copynumber: 4.6 Consensus size: 22
31783 ATGTTCATAC
31793 GAAATTATGATAACCTTCCTAT
1 GAAATTATGATAACCTTCCTAT
*
31815 TAAATTATGATAA--TTACACTAT
1 GAAATTATGATAACCTT-C-CTAT
*** * *
31837 -TTTTTATGACATCC-T--TAT
1 GAAATTATGATAACCTTCCTAT
*
31855 GAAATTTTGATAACCTTCCTAT
1 GAAATTATGATAACCTTCCTAT
31877 GAAATTATGATAA
1 GAAATTATGATAA
31890 TTACACTATT
Statistics
Matches: 54, Mismatches: 13, Indels: 16
0.65 0.16 0.19
Matches are distributed among these distances:
18 3 0.06
19 8 0.15
20 3 0.06
21 8 0.15
22 32 0.59
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.41
Consensus pattern (22 bp):
GAAATTATGATAACCTTCCTAT
Found at i:31869 original size:62 final size:62
Alignment explanation
Indices: 31793--31944 Score: 259
Period size: 62 Copynumber: 2.5 Consensus size: 62
31783 ATGTTCATAC
* *
31793 GAAATTATGATAACCTTCCTATTAAATTATGATAATTACACTATTTTTTATGACATCCTTAT
1 GAAATTTTGATAACCTTCCTATGAAATTATGATAATTACACTATTTTTTATGACATCCTTAT
*
31855 GAAATTTTGATAACCTTCCTATGAAATTATGATAATTACACTATTTTTTATGACGTCCTTAT
1 GAAATTTTGATAACCTTCCTATGAAATTATGATAATTACACTATTTTTTATGACATCCTTAT
* *
31917 GAAATATTGATGACCTTCCTATGAAATT
1 GAAATTTTGATAACCTTCCTATGAAATT
31945 TCAATAACGA
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 85 1.00
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.42
Consensus pattern (62 bp):
GAAATTTTGATAACCTTCCTATGAAATTATGATAATTACACTATTTTTTATGACATCCTTAT
Found at i:32224 original size:22 final size:22
Alignment explanation
Indices: 32199--32286 Score: 95
Period size: 23 Copynumber: 3.9 Consensus size: 22
32189 GATAATCACA
* *
32199 CTATGAAATTGTGATAACCTTG
1 CTATAAAATTTTGATAACCTTG
*
32221 CTATAAAATTTTGATAAACCTTT
1 CTATAAAATTTTGAT-AACCTTG
* * **
32244 TTATAAAATTTTGATAAATCTCC
1 CTATAAAATTTTGAT-AACCTTG
32267 CTATAAAATTTTGATAACCT
1 CTATAAAATTTTGATAACCT
32287 CCTTATGAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
22 17 0.30
23 39 0.70
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.41
Consensus pattern (22 bp):
CTATAAAATTTTGATAACCTTG
Found at i:32237 original size:11 final size:11
Alignment explanation
Indices: 32223--32261 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
32213 TAACCTTGCT
32223 ATAAAATTTTG
1 ATAAAATTTTG
* *
32234 ATAAACCTTTTT
1 ATAAA-ATTTTG
32246 ATAAAATTTTG
1 ATAAAATTTTG
32257 ATAAA
1 ATAAA
32262 TCTCCCTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (11 bp):
ATAAAATTTTG
Found at i:32297 original size:22 final size:22
Alignment explanation
Indices: 31848--32306 Score: 121
Period size: 22 Copynumber: 21.0 Consensus size: 22
31838 TTTTATGACA
31848 TCCTTATGAAATTTTGATAACC
1 TCCTTATGAAATTTTGATAACC
* *
31870 TTCC-TATGAAATTATGATAA-T
1 -TCCTTATGAAATTTTGATAACC
* * *
31891 TACAC-TAT----TTTTTATGACG
1 T-C-CTTATGAAATTTTGATAACC
* *
31910 TCCTTATGAAATATTGATGACC
1 TCCTTATGAAATTTTGATAACC
** *
31932 TTCC-TATGAAATTTCAATAACGA
1 -TCCTTATGAAATTTTGATAAC-C
* * * *
31955 TAC-TATGGAATTTCGAGAACC
1 TCCTTATGAAATTTTGATAACC
** **
31976 TTTTTAT-AAATTTTTTTTAACC
1 TCCTTATGAAA-TTTTGATAACC
*
31998 AT-CTTATGAAATTTTGTTAACC
1 -TCCTTATGAAATTTTGATAACC
* * * *
32020 -CCCTAAGGAATTTTGA-AGATC
1 TCCTTATGAAATTTTGATA-ACC
*
32041 TCAC-TATGAAATTTTAATAA-C
1 TC-CTTATGAAATTTTGATAACC
* *
32062 TTCTAAATGAAATTTTGATAACC
1 TCCT-TATGAAATTTTGATAACC
*
32085 AACAC-TAT-AAGATTTTGATAACC
1 -TC-CTTATGAA-ATTTTGATAACC
* ** *
32108 TCCATATGGTATATTGATAACC
1 TCCTTATGAAATTTTGATAACC
* * * * *
32130 ACGTTATGAAAATTTAAAAACC
1 TCCTTATGAAATTTTGATAACC
* * * *
32152 TCCATATG-AATTCTCAGTAATC
1 TCCTTATGAAATTTTGA-TAACC
* * * *
32174 ACATTTTGAAATTTTGATAATC
1 TCCTTATGAAATTTTGATAACC
* *
32196 ACAC-TATGAAATTGTGATAACC
1 TC-CTTATGAAATTTTGATAACC
* *
32218 TTGC-TATAAAATTTTGATAAACC
1 -TCCTTATGAAATTTTGAT-AACC
** * *
32241 TTTTTATAAAATTTTGATAAATC
1 TCCTTATGAAATTTTGAT-AACC
* *
32264 TCCCTATAAAATTTTGATAACC
1 TCCTTATGAAATTTTGATAACC
*
32286 TCCTTATGAAATCTTGATAAC
1 TCCTTATGAAATTTTGATAAC
32307 TACAAATTTT
Statistics
Matches: 316, Mismatches: 87, Indels: 67
0.67 0.19 0.14
Matches are distributed among these distances:
17 1 0.00
18 10 0.03
19 1 0.00
20 3 0.01
21 25 0.08
22 205 0.65
23 70 0.22
25 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (22 bp):
TCCTTATGAAATTTTGATAACC
Found at i:32406 original size:22 final size:22
Alignment explanation
Indices: 32180--32409 Score: 77
Period size: 22 Copynumber: 10.4 Consensus size: 22
32170 AATCACATTT
* *
32180 TGAAATTTTGATAATCACAC-TA
1 TGAAATTTTGATAA-CCCTCTTA
* *
32202 TGAAATTGTGATAACCTTGC-TA
1 TGAAATTTTGATAACCCT-CTTA
* * *
32224 TAAAATTTTGATAAACCTTTTTA
1 TGAAATTTTGAT-AACCCTCTTA
* ** *
32247 TAAAATTTTGATAAATCTCCCTA
1 TGAAATTTTGATAACCCT-CTTA
*
32270 TAAAATTTTGATAA-CCTCCTTA
1 TGAAATTTTGATAACCCT-CTTA
*
32292 TGAAATCTTGATAA----C-TA
1 TGAAATTTTGATAACCCTCTTA
*
32309 -CAAATTTTGATAA-CCTCATTA
1 TGAAATTTTGATAACCCTC-TTA
* *** *
32330 CT-AAATTTTGTTAATATTCCTA
1 -TGAAATTTTGATAACCCTCTTA
* *
32352 TGAAATTTTGATCTACATCTACATACTA
1 TGAAATTTTGAT-AAC-CCT-C-T--TA
32380 TGAAATTTTGATAACCCTCTTA
1 TGAAATTTTGATAACCCTCTTA
32402 TGAAATTT
1 TGAAATTT
32410 GAAAACTAAA
Statistics
Matches: 159, Mismatches: 30, Indels: 38
0.70 0.13 0.17
Matches are distributed among these distances:
16 11 0.07
17 2 0.01
18 1 0.01
19 1 0.01
21 4 0.03
22 79 0.50
23 39 0.25
24 2 0.01
25 2 0.01
26 2 0.01
27 2 0.01
28 14 0.09
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.41
Consensus pattern (22 bp):
TGAAATTTTGATAACCCTCTTA
Found at i:32628 original size:22 final size:22
Alignment explanation
Indices: 32576--32696 Score: 111
Period size: 22 Copynumber: 5.5 Consensus size: 22
32566 AATCACATTT
* * *
32576 TGAAAATTTAATAACCTCTTTA
1 TGAAATTTTGATAACCTCTCTA
32598 TGAAATTTTGATAACCTCTCTA
1 TGAAATTTTGATAACCTCTCTA
* * *
32620 -GAAAATTTTGTTGACCCCTCTA
1 TG-AAATTTTGATAACCTCTCTA
* *
32642 TGAAATTTTGATAATCACAT-TA
1 TGAAATTTTGATAACCTC-TCTA
* * *
32664 TGTAATTTTGATAACCTCGCTT
1 TGAAATTTTGATAACCTCTCTA
32686 TGAAATTTTGA
1 TGAAATTTTGA
32697 AATTGGACCA
Statistics
Matches: 79, Mismatches: 16, Indels: 8
0.77 0.16 0.08
Matches are distributed among these distances:
21 1 0.01
22 76 0.96
23 2 0.03
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (22 bp):
TGAAATTTTGATAACCTCTCTA
Found at i:32671 original size:44 final size:44
Alignment explanation
Indices: 32551--32696 Score: 143
Period size: 44 Copynumber: 3.3 Consensus size: 44
32541 AGAAATACCA
* * * *
32551 CTATGAAATTTTGGTAATCACATTTTGAAAATTTAATAACCTCT
1 CTATGAAATTTTGATAATCACATTATGAAATTTTGATAACCTCT
* * * * * *
32595 TTATGAAATTTTGATAACCTC-TCTA-GAAAATTTTGTTGACCCCT
1 CTATGAAATTTTGATAATCACAT-TATG-AAATTTTGATAACCTCT
* *
32639 CTATGAAATTTTGATAATCACATTATGTAATTTTGATAACCTCG
1 CTATGAAATTTTGATAATCACATTATGAAATTTTGATAACCTCT
*
32683 CTTTGAAATTTTGA
1 CTATGAAATTTTGA
32697 AATTGGACCA
Statistics
Matches: 79, Mismatches: 19, Indels: 8
0.75 0.18 0.08
Matches are distributed among these distances:
43 2 0.03
44 75 0.95
45 2 0.03
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (44 bp):
CTATGAAATTTTGATAATCACATTATGAAATTTTGATAACCTCT
Found at i:33019 original size:32 final size:31
Alignment explanation
Indices: 32953--33020 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 31
32943 TGGCAATTTA
* *
32953 GAAATATGTTTTTTTAAAAAAGGGTACAATGG
1 GAAATATG-TTTTTAAAAAAAGGATACAATGG
32985 GAAATATG-TTTTAAAAATAAGGATACAATCGG
1 GAAATATGTTTTTAAAAA-AAGGATACAAT-GG
33017 GAAA
1 GAAA
33021 CATAAAGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 8 0.25
31 10 0.31
32 14 0.44
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (31 bp):
GAAATATGTTTTTAAAAAAAGGATACAATGG
Found at i:33055 original size:2 final size:2
Alignment explanation
Indices: 33048--33091 Score: 63
Period size: 2 Copynumber: 22.0 Consensus size: 2
33038 TTCGTACTTT
*
33048 TA TA TA TA GTA TA GA TA TA -A TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
33090 TA
1 TA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
1 1 0.03
2 35 0.92
3 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (2 bp):
TA
Done.