Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01007149.1 Corchorus capsularis cultivar CVL-1 contig07170, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21760
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.30
Found at i:2821 original size:36 final size:34
Alignment explanation
Indices: 2778--2864 Score: 92
Period size: 36 Copynumber: 2.6 Consensus size: 34
2768 GATCAGTCAG
2778 AAAAGTAAAAAGGGTAATCAGAGTAATTAACTTCCA
1 AAAAGTAAAAA-GGTAATCAGAGTAATTAACTT-CA
* *
2814 AAAAGTAAAAAAGGCAATC--AGTAATTAAGTTCA
1 AAAAGT-AAAAAGGTAATCAGAGTAATTAACTTCA
*
2847 ATAAG-AAAAA-GTAATCAG
1 AAAAGTAAAAAGGTAATCAG
2865 TGATTAAGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
30 5 0.11
31 5 0.11
33 6 0.14
34 11 0.25
36 12 0.27
37 5 0.11
ACGTcount: A:0.54, C:0.09, G:0.16, T:0.21
Consensus pattern (34 bp):
AAAAGTAAAAAGGTAATCAGAGTAATTAACTTCA
Found at i:2864 original size:30 final size:31
Alignment explanation
Indices: 2829--2898 Score: 108
Period size: 30 Copynumber: 2.3 Consensus size: 31
2819 TAAAAAAGGC
2829 AATCAGTAATTAAGTTCAATAAGAAA-A-AGT
1 AATCAGTAATTAAGTTCAATAAGAAAGATA-T
*
2859 AATCAGTGATTAAGTTCAATAAGAAAGATAT
1 AATCAGTAATTAAGTTCAATAAGAAAGATAT
2890 AATCAGTAA
1 AATCAGTAA
2899 AAGGTAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
30 25 0.69
31 10 0.28
32 1 0.03
ACGTcount: A:0.51, C:0.07, G:0.14, T:0.27
Consensus pattern (31 bp):
AATCAGTAATTAAGTTCAATAAGAAAGATAT
Found at i:2927 original size:22 final size:22
Alignment explanation
Indices: 2890--3090 Score: 82
Period size: 22 Copynumber: 9.4 Consensus size: 22
2880 AGAAAGATAT
*
2890 AATCAGTAAA-AGGTAAAATGGC
1 AATCAGTAAAGA-GTAAAATGAC
* * *
2912 AATTAGTAAAGAGTAAAGTGAT
1 AATCAGTAAAGAGTAAAATGAC
*
2934 AATCAGTAAAGAGTAATA-GA-
1 AATCAGTAAAGAGTAAAATGAC
*
2954 AATCAGT-AAGAAGTAATA-GTA-
1 AATCAGTAAAG-AGTAAAATG-AC
* * **
2975 AA-CAGTAAAAAGGTAAAAAGGT
1 AATCAGTAAAGA-GTAAAATGAC
* * *
2997 AATCAGTAAAAAAGTAAAAAG-G
1 AATCAGT-AAAGAGTAAAATGAC
* * * **
3019 TATCTG-AAAGGGTAAAATGGT
1 AATCAGTAAAGAGTAAAATGAC
* * *
3040 AATTAGTAAAGAGTAAAGTGAT
1 AATCAGTAAAGAGTAAAATGAC
*
3062 AATCAGTAAAGAGTAATA-GA-
1 AATCAGTAAAGAGTAAAATGAC
3082 AATCAGTAA
1 AATCAGTAA
3091 GAAGTAATAG
Statistics
Matches: 142, Mismatches: 26, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
19 3 0.02
20 39 0.27
21 17 0.12
22 65 0.46
23 13 0.09
24 5 0.04
ACGTcount: A:0.53, C:0.04, G:0.21, T:0.21
Consensus pattern (22 bp):
AATCAGTAAAGAGTAAAATGAC
Found at i:2959 original size:20 final size:20
Alignment explanation
Indices: 2916--3110 Score: 80
Period size: 20 Copynumber: 9.2 Consensus size: 20
2906 AATGGCAATT
2916 AGTAAAGAGTAA-AGTGATAATC
1 AGTAAAGAGTAATA--GA-AATC
2938 AGTAAAGAGTAATAGAAATC
1 AGTAAAGAGTAATAGAAATC
2958 AGT-AAGAAGTAATAGTAAA-C
1 AGTAAAG-AGTAATAG-AAATC
* * *
2978 AGTAAAAAGGTAAAAAGGTAATC
1 AGTAAAGA-GT-AATA-GAAATC
* * **
3001 AGTAAAAAAGTAAAAAGGTATC
1 AGT-AAAGAGT-AATAGAAATC
* * * * *
3023 TG-AAAGGGTAAAATGGTAATT
1 AGTAAAGAGT--AATAGAAATC
3044 AGTAAAGAGTAA-AGTGATAATC
1 AGTAAAGAGTAATA--GA-AATC
3066 AGTAAAGAGTAATAGAAATC
1 AGTAAAGAGTAATAGAAATC
3086 AGT-AAGAAGTAATAGTAAA-C
1 AGTAAAG-AGTAATAG-AAATC
3106 AGTAA
1 AGTAA
3111 TAGTAAATAG
Statistics
Matches: 137, Mismatches: 18, Indels: 37
0.71 0.09 0.19
Matches are distributed among these distances:
19 6 0.04
20 46 0.34
21 23 0.17
22 43 0.31
23 14 0.10
24 5 0.04
ACGTcount: A:0.53, C:0.04, G:0.22, T:0.21
Consensus pattern (20 bp):
AGTAAAGAGTAATAGAAATC
Found at i:2992 original size:8 final size:8
Alignment explanation
Indices: 2979--3020 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
2969 ATAGTAAACA
2979 GTAAAAAG
1 GTAAAAAG
2987 GTAAAAAG
1 GTAAAAAG
**
2995 GTAATCA-
1 GTAAAAAG
*
3002 GTAAAAAA
1 GTAAAAAG
3010 GTAAAAAG
1 GTAAAAAG
3018 GTA
1 GTA
3021 TCTGAAAGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
7 5 0.18
8 23 0.82
ACGTcount: A:0.60, C:0.02, G:0.21, T:0.17
Consensus pattern (8 bp):
GTAAAAAG
Found at i:3038 original size:128 final size:128
Alignment explanation
Indices: 2897--3232 Score: 451
Period size: 128 Copynumber: 2.5 Consensus size: 128
2887 TATAATCAGT
*
2897 AAAAGGTAAAATGGCAATTAGTAAAGAGTAAAGTGATAATCAGTAAAGAGTAATAGAAATCAGTA
1 AAAAGGTAAAATGGTAATTAGTAAAGAGTAAAGTGATAATCAGTAAAGAGTAATAGAAATCAGTA
*
2962 AGAAGTAATAGTAAAC-AGTAAAAAGGTAAAAAGGTAATCAGTAAAAAAGTAAAAAGGTATCTG
66 AGAAGTAATAGTAAACAAGTAAAAAGGTAAAAAGATAATCAGT-AAAAAGTAAAAAGGTATCTG
*
3025 AAAGGGTAAAATGGTAATTAGTAAAGAGTAAAGTGATAATCAGTAAAGAGTAATAGAAATCAGTA
1 AAAAGGTAAAATGGTAATTAGTAAAGAGTAAAGTGATAATCAGTAAAGAGTAATAGAAATCAGTA
3090 AGAAGTAATAGTAAACAGTAATAGTAAATAGTAAAAAGGTAAAAAGATAATCAGTAAAAAGTAAA
66 AGAAGTAATAGTAAAC-----------A-AGTAAAAAGGTAAAAAGATAATCAGTAAAAAGTAAA
3155 AAGGTATCTG
119 AAGGTATCTG
* * * *
3165 AAAAGGTAAAATGGTAATTAGAAAAGAGTAAAATGGTAATCAGTAACA-AGTAAAAGAGCAATCA
1 AAAAGGTAAAATGGTAATTAGTAAAGAGTAAAGTGATAATCAGTAA-AGAGTAATAGA--AATCA
3229 GTAA
63 GTAA
3233 AAAATGTAAA
Statistics
Matches: 184, Mismatches: 8, Indels: 18
0.88 0.04 0.09
Matches are distributed among these distances:
128 79 0.43
140 70 0.38
141 26 0.14
142 9 0.05
ACGTcount: A:0.54, C:0.04, G:0.21, T:0.21
Consensus pattern (128 bp):
AAAAGGTAAAATGGTAATTAGTAAAGAGTAAAGTGATAATCAGTAAAGAGTAATAGAAATCAGTA
AGAAGTAATAGTAAACAAGTAAAAAGGTAAAAAGATAATCAGTAAAAAGTAAAAAGGTATCTG
Found at i:3102 original size:13 final size:13
Alignment explanation
Indices: 3093--3123 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3083 ATCAGTAAGA
3093 AGTAATAGTAAAC
1 AGTAATAGTAAAC
*
3106 AGTAATAGTAAAT
1 AGTAATAGTAAAC
3119 AGTAA
1 AGTAA
3124 AAAGGTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.03, G:0.16, T:0.26
Consensus pattern (13 bp):
AGTAATAGTAAAC
Found at i:3146 original size:30 final size:28
Alignment explanation
Indices: 3100--3160 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 28
3090 AGAAGTAATA
* *
3100 GTAAACAGTAATAGTAAATAGTAAAAAG
1 GTAAAAAGTAATAGTAAAAAGTAAAAAG
3128 GTAAAAAGATAATCAGTAAAAAGTAAAAAG
1 GTAAAAAG-TAAT-AGTAAAAAGTAAAAAG
3158 GTA
1 GTA
3161 TCTGAAAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 7 0.24
29 4 0.14
30 18 0.62
ACGTcount: A:0.59, C:0.03, G:0.18, T:0.20
Consensus pattern (28 bp):
GTAAAAAGTAATAGTAAAAAGTAAAAAG
Found at i:3153 original size:22 final size:22
Alignment explanation
Indices: 3148--3329 Score: 101
Period size: 22 Copynumber: 8.3 Consensus size: 22
3138 AATCAGTAAA
*
3148 AAGTAAAAAGGT-ATCTG-AAA
1 AAGTAAAAAGGTAATCAGTAAA
* * *
3168 AGGTAAAATGGTAATTAG-AAA
1 AAGTAAAAAGGTAATCAGTAAA
* *
3189 AGAGTAAAATGGTAATCAGTAAC
1 A-AGTAAAAAGGTAATCAGTAAA
*
3212 AAGT-AAAAGAGCAATCAGTAAAA
1 AAGTAAAAAG-GTAATCAGT-AAA
*
3235 AATGTAAAAATGGTAATTAGTAAA
1 AA-GTAAAAA-GGTAATCAGTAAA
* * *
3259 GAGTAAAATGGCAATCAGTAAA
1 AAGTAAAAAGGTAATCAGTAAA
* **
3281 AA--AAAATA-ATAAAAGAGTAAA
1 AAGTAAAA-AGGT-AATCAGTAAA
3302 AAGT-AAAAGAGTAATCAGTAAA
1 AAGTAAAAAG-GTAATCAGTAAA
*
3324 GAGTAA
1 AAGTAA
3330 CCAGTAAAGA
Statistics
Matches: 121, Mismatches: 26, Indels: 27
0.70 0.15 0.16
Matches are distributed among these distances:
20 14 0.12
21 22 0.18
22 52 0.43
23 15 0.12
24 6 0.05
25 11 0.09
26 1 0.01
ACGTcount: A:0.57, C:0.04, G:0.19, T:0.20
Consensus pattern (22 bp):
AAGTAAAAAGGTAATCAGTAAA
Found at i:3175 original size:42 final size:42
Alignment explanation
Indices: 3123--3202 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
3113 GTAAATAGTA
3123 AAAAGGTAAAAAGATAATCAGTAAAA-AGTAAAAAGGTATCTG
1 AAAAGGTAAAAAGATAATCAG-AAAAGAGTAAAAAGGTATCTG
* * * *
3165 AAAAGGTAAAATGGTAATTAGAAAAGAGTAAAATGGTA
1 AAAAGGTAAAAAGATAATCAGAAAAGAGTAAAAAGGTA
3203 ATCAGTAACA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 4 0.12
42 29 0.88
ACGTcount: A:0.56, C:0.03, G:0.21, T:0.20
Consensus pattern (42 bp):
AAAAGGTAAAAAGATAATCAGAAAAGAGTAAAAAGGTATCTG
Found at i:3207 original size:140 final size:142
Alignment explanation
Indices: 2965--3232 Score: 434
Period size: 140 Copynumber: 1.9 Consensus size: 142
2955 ATCAGTAAGA
* *
2965 AGTAATAGTAAACAGTAAAAAGGTAAAAAGGTAATCAGTAAAAAAGTAAAAAGGTATCTGAAAGG
1 AGTAATAGTAAACAGTAAAAAGGTAAAAAGATAATCAGTAAAAAAGTAAAAAGGTATCTGAAAAG
* * *
3030 GTAAAATGGTAATTAGTAAAGAGTAAAGTGATAATCAGTAA-AGAGTAATAGA-AATCAGTAAGA
66 GTAAAATGGTAATTAGAAAAGAGTAAAATGATAATCAGTAACA-AGTAAAAGACAATCAGTAAGA
3093 AGTAATAGTAAAC
130 AGTAATAGTAAAC
*
3106 AGTAATAGTAAATAGTAAAAAGGTAAAAAGATAATCAGT-AAAAAGTAAAAAGGTATCTGAAAAG
1 AGTAATAGTAAACAGTAAAAAGGTAAAAAGATAATCAGTAAAAAAGTAAAAAGGTATCTGAAAAG
*
3170 GTAAAATGGTAATTAGAAAAGAGTAAAATGGTAATCAGTAACAAGTAAAAGAGCAATCAGTAA
66 GTAAAATGGTAATTAGAAAAGAGTAAAATGATAATCAGTAACAAGTAAAAGA-CAATCAGTAA
3233 AAAATGTAAA
Statistics
Matches: 117, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
140 70 0.60
141 38 0.32
142 9 0.08
ACGTcount: A:0.54, C:0.04, G:0.21, T:0.21
Consensus pattern (142 bp):
AGTAATAGTAAACAGTAAAAAGGTAAAAAGATAATCAGTAAAAAAGTAAAAAGGTATCTGAAAAG
GTAAAATGGTAATTAGAAAAGAGTAAAATGATAATCAGTAACAAGTAAAAGACAATCAGTAAGAA
GTAATAGTAAAC
Found at i:3246 original size:47 final size:47
Alignment explanation
Indices: 3138--3283 Score: 150
Period size: 47 Copynumber: 3.3 Consensus size: 47
3128 GTAAAAAGAT
* * *
3138 AATCAGT-AAAAA-GTAAAAA-GGT-ATCTGAAAAG-GTAAAATGGT
1 AATCAGTAAAAAATGTAAAAATGGTAATCAGTAAAGAGTAAAATGGC
* *
3180 AATTAG-AAAAGA-GT-AAAATGGTAATCAGTAACA-AGTAAAA-GAGC
1 AATCAGTAAAAAATGTAAAAATGGTAATCAGTAA-AGAGTAAAATG-GC
*
3224 AATCAGTAAAAAATGTAAAAATGGTAATTAGTAAAGAGTAAAATGGC
1 AATCAGTAAAAAATGTAAAAATGGTAATCAGTAAAGAGTAAAATGGC
3271 AATCAGTAAAAAA
1 AATCAGTAAAAAA
3284 AAATAATAAA
Statistics
Matches: 85, Mismatches: 8, Indels: 17
0.77 0.07 0.15
Matches are distributed among these distances:
41 4 0.05
42 14 0.16
43 7 0.08
44 13 0.15
45 5 0.06
46 3 0.04
47 38 0.45
48 1 0.01
ACGTcount: A:0.55, C:0.05, G:0.19, T:0.21
Consensus pattern (47 bp):
AATCAGTAAAAAATGTAAAAATGGTAATCAGTAAAGAGTAAAATGGC
Found at i:3251 original size:140 final size:140
Alignment explanation
Indices: 2958--3266 Score: 430
Period size: 140 Copynumber: 2.2 Consensus size: 140
2948 AATAGAAATC
* *
2958 AGTAAGAAGTAATAGTAAACAGTAAAAAGGTAAAAAGGTAATCAGTAAAAAAGTAAAAAGGTATC
1 AGTAAAAAGTAATAGTAAACAGTAAAAAGGTAAAAAGATAATCAGTAAAAAAGTAAAAAGGTATC
* * * *
3023 TGAAAGGGTAAAATGGTAATTAGTAAAGAGTAAAGTGATAATCAGTAAAGAGTAATAGAAATCAG
66 TGAAAAGGTAAAATGGTAATTAGAAAAGAGTAAAATGATAATCAGTAAAGAGTAAAAGAAATCAG
3088 TAAGAAGTAAT
131 TAAGAAG-AAT
* *
3099 AGTAAACAGTAATAGTAAATAGTAAAAAGGTAAAAAGATAATCAGT-AAAAAGTAAAAAGGTATC
1 AGTAAAAAGTAATAGTAAACAGTAAAAAGGTAAAAAGATAATCAGTAAAAAAGTAAAAAGGTATC
*
3163 TGAAAAGGTAAAATGGTAATTAGAAAAGAGTAAAATGGTAATCAGTAACA-AGTAAAAGAGCAAT
66 TGAAAAGGTAAAATGGTAATTAGAAAAGAGTAAAATGATAATCAGTAA-AGAGTAAAAGA--AAT
3227 CAGTAA-AA-AAT
128 CAGTAAGAAGAAT
*
3238 -GTAAAAATGGTAATTAGTAAAGAGTAAAA
1 AGTAAAAA--GTAA-TAGTAAACAGTAAAA
3267 TGGCAATCAG
Statistics
Matches: 151, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
138 6 0.04
139 3 0.02
140 74 0.49
141 59 0.39
142 9 0.06
ACGTcount: A:0.55, C:0.04, G:0.20, T:0.21
Consensus pattern (140 bp):
AGTAAAAAGTAATAGTAAACAGTAAAAAGGTAAAAAGATAATCAGTAAAAAAGTAAAAAGGTATC
TGAAAAGGTAAAATGGTAATTAGAAAAGAGTAAAATGATAATCAGTAAAGAGTAAAAGAAATCAG
TAAGAAGAAT
Found at i:3310 original size:15 final size:15
Alignment explanation
Indices: 3290--3329 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
3280 AAAAAAATAA
3290 TAAAAGAGTAAAAAG
1 TAAAAGAGTAAAAAG
**
3305 TAAAAGAGTAATCAG
1 TAAAAGAGTAAAAAG
3320 T-AAAGAGTAA
1 TAAAAGAGTAA
3330 CCAGTAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.60, C:0.03, G:0.20, T:0.17
Consensus pattern (15 bp):
TAAAAGAGTAAAAAG
Found at i:3326 original size:14 final size:14
Alignment explanation
Indices: 3292--3437 Score: 86
Period size: 14 Copynumber: 10.3 Consensus size: 14
3282 AAAAATAATA
**
3292 AAAGAGTAAAAAGT
1 AAAGAGTAATCAGT
3306 AAAAGAGTAATCAGT
1 -AAAGAGTAATCAGT
*
3321 AAAGAGTAACCAGT
1 AAAGAGTAATCAGT
3335 AAAGAAAAATGGTAATCAGT
1 AAAG----A--GTAATCAGT
3355 AAAGAGTAATCAGT
1 AAAGAGTAATCAGT
** *
3369 AAAGAAAAAT-GGT
1 AAAGAGTAATCAGT
**
3382 AAAGAGTAAAGAGT
1 AAAGAGTAATCAGT
**
3396 AAAGA--AAAGAGT
1 AAAGAGTAATCAGT
3408 AAAGAGTAA--AGT
1 AAAGAGTAATCAGT
* *
3420 TAAGAGTAATCAGC
1 AAAGAGTAATCAGT
3434 AAAG
1 AAAG
3438 TAAAATGGCA
Statistics
Matches: 106, Mismatches: 14, Indels: 23
0.74 0.10 0.16
Matches are distributed among these distances:
12 23 0.22
13 9 0.08
14 48 0.45
15 12 0.11
16 1 0.01
18 1 0.01
20 12 0.11
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.16
Consensus pattern (14 bp):
AAAGAGTAATCAGT
Found at i:3351 original size:34 final size:34
Alignment explanation
Indices: 3312--3397 Score: 145
Period size: 34 Copynumber: 2.5 Consensus size: 34
3302 AAGTAAAAGA
3312 GTAATCAGTAAAGAGTAACCAGTAAAGAAAAATG
1 GTAATCAGTAAAGAGTAACCAGTAAAGAAAAATG
*
3346 GTAATCAGTAAAGAGTAATCAGTAAAGAAAAATG
1 GTAATCAGTAAAGAGTAACCAGTAAAGAAAAATG
**
3380 GTAAAGAGTAAAGAGTAA
1 GTAATCAGTAAAGAGTAA
3398 AGAAAAGAGT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.53, C:0.06, G:0.22, T:0.19
Consensus pattern (34 bp):
GTAATCAGTAAAGAGTAACCAGTAAAGAAAAATG
Found at i:3354 original size:20 final size:20
Alignment explanation
Indices: 3326--3393 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 20
3316 TCAGTAAAGA
*
3326 GTAACCAGTAAAGAAAAATG
1 GTAATCAGTAAAGAAAAATG
3346 GTAATCAGTAAAG----A--
1 GTAATCAGTAAAGAAAAATG
3360 GTAATCAGTAAAGAAAAATG
1 GTAATCAGTAAAGAAAAATG
**
3380 GTAAAGAGTAAAGA
1 GTAATCAGTAAAGA
3394 GTAAAGAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
14 13 0.33
16 1 0.03
18 1 0.03
20 24 0.62
ACGTcount: A:0.54, C:0.06, G:0.22, T:0.18
Consensus pattern (20 bp):
GTAATCAGTAAAGAAAAATG
Found at i:3362 original size:7 final size:7
Alignment explanation
Indices: 3352--3562 Score: 96
Period size: 7 Copynumber: 31.7 Consensus size: 7
3342 AATGGTAATC
3352 AGTAAAG
1 AGTAAAG
**
3359 AGTAATC
1 AGTAAAG
3366 AGTAAAG
1 AGTAAAG
*
3373 A-AAAATG
1 AGTAAA-G
3380 -GTAAAG
1 AGTAAAG
3386 AGTAAAG
1 AGTAAAG
3393 AGTAAAG
1 AGTAAAG
3400 A--AAAG
1 AGTAAAG
3405 AGTAAAG
1 AGTAAAG
3412 AGT-AA-
1 AGTAAAG
*
3417 AGTTAAG
1 AGTAAAG
**
3424 AGTAATC
1 AGTAAAG
*
3431 AG-CAA-
1 AGTAAAG
3436 AGTAAA-
1 AGTAAAG
* *
3442 ATGGCAAAA
1 A--GTAAAG
3451 AGTAAAAG
1 AGT-AAAG
* **
3459 AGCAATC
1 AGTAAAG
3466 AGTAAAG
1 AGTAAAG
*
3473 TG-AAATG
1 AGTAAA-G
3480 A-TAAAG
1 AGTAAAG
3486 AGTAAAG
1 AGTAAAG
3493 AGTAAAG
1 AGTAAAG
3500 A--AAAG
1 AGTAAAG
**
3505 AGTAATC
1 AGTAAAG
3512 AGTAAAG
1 AGTAAAG
*
3519 A-AAAATG
1 AGTAAA-G
3526 -GTAAAG
1 AGTAAAG
*
3532 AGTAAAT
1 AGTAAAG
3539 AGTAAAG
1 AGTAAAG
3546 AGT--AG
1 AGTAAAG
3551 AGTAAAG
1 AGTAAAG
3558 AGTAA
1 AGTAA
3563 TCAACAAAGG
Statistics
Matches: 151, Mismatches: 31, Indels: 44
0.67 0.14 0.19
Matches are distributed among these distances:
5 20 0.13
6 21 0.14
7 100 0.66
8 9 0.06
9 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.24, T:0.17
Consensus pattern (7 bp):
AGTAAAG
Found at i:3383 original size:27 final size:26
Alignment explanation
Indices: 3352--3417 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 26
3342 AATGGTAATC
*
3352 AGTAAAGAGTAATCAGTAAAGAAAA-
1 AGTAAAGAGTAAACAGTAAAGAAAAG
*
3377 ATGGTAAAGAGTAAAGAGTAAAGAAAAG
1 A--GTAAAGAGTAAACAGTAAAGAAAAG
3405 AGTAAAGAGTAAA
1 AGTAAAGAGTAAA
3418 GTTAAGAGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
25 1 0.03
26 12 0.33
27 22 0.61
28 1 0.03
ACGTcount: A:0.59, C:0.02, G:0.24, T:0.15
Consensus pattern (26 bp):
AGTAAAGAGTAAACAGTAAAGAAAAG
Found at i:3406 original size:19 final size:19
Alignment explanation
Indices: 3382--3558 Score: 103
Period size: 19 Copynumber: 9.0 Consensus size: 19
3372 GAAAAATGGT
3382 AAAGAGTAAAGAGTAAAGA
1 AAAGAGTAAAGAGTAAAGA
*
3401 AAAGAGTAAAGAGTAAAGT
1 AAAGAGTAAAGAGTAAAGA
* ** *
3420 TAAGAGTAATCAGCAAAGTA
1 AAAGAGTAAAGAGTAAAG-A
* *
3440 AAATG-GCAAAAAGTAAAAGA
1 AAA-GAGTAAAGAGT-AAAGA
** *
3460 GCAATCAGTAAAGTG-AAATGA
1 --AAAGAGTAAAGAGTAAA-GA
3481 TAAAGAGTAAAGAGTAAAGA
1 -AAAGAGTAAAGAGTAAAGA
**
3501 AAAGAGTAATCAGTAAAGA
1 AAAGAGTAAAGAGTAAAGA
*
3520 AAA-ATGGTAAAGAGTAAATAGT
1 AAAGA--GTAAAGAGT-AA-AGA
3542 AAAGAGT--AGAGTAAAGA
1 AAAGAGTAAAGAGTAAAGA
3559 GTAATCAACA
Statistics
Matches: 119, Mismatches: 26, Indels: 28
0.69 0.15 0.16
Matches are distributed among these distances:
17 2 0.02
18 3 0.03
19 57 0.48
20 30 0.25
21 14 0.12
22 12 0.10
23 1 0.01
ACGTcount: A:0.57, C:0.03, G:0.24, T:0.16
Consensus pattern (19 bp):
AAAGAGTAAAGAGTAAAGA
Found at i:3471 original size:100 final size:99
Alignment explanation
Indices: 3299--3518 Score: 280
Period size: 100 Copynumber: 2.2 Consensus size: 99
3289 ATAAAAGAGT
* * ** *
3299 AAAA-AGTAAAAGAGTAATCAGTAAAGAGTAACCAGTAAAGAAAAATGGTAATCAGTAAAGAGTA
1 AAAAGAGT-AAAGAGTAA--AGTAAAGAGTAACCAGCAAAGAAAAATGGCAAAAAGTAAAGAGCA
*
3363 ATCAGTAAAGAAAAATGGTAAAGAGTAAAGAGTAAAG
63 ATCAGTAAAGAAAAATGATAAAGAGTAAAGAGTAAAG
* * *
3400 AAAAGAGTAAAGAGTAAAGTTAAGAGTAATCAGCAAAGTAAAATGGCAAAAAGTAAAAGAGCAAT
1 AAAAGAGTAAAGAGTAAAGTAAAGAGTAACCAGCAAAGAAAAATGGCAAAAAGT-AAAGAGCAAT
**
3465 CAGTAAAGTGAAATGATAAAGAGTAAAGAGTAAAG
65 CAGTAAAGAAAAATGATAAAGAGTAAAGAGTAAAG
**
3500 AAAAGAGTAATCAGTAAAG
1 AAAAGAGTAAAGAGTAAAG
3519 AAAAATGGTA
Statistics
Matches: 104, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
99 30 0.29
100 58 0.56
101 13 0.12
102 3 0.03
ACGTcount: A:0.56, C:0.05, G:0.22, T:0.16
Consensus pattern (99 bp):
AAAAGAGTAAAGAGTAAAGTAAAGAGTAACCAGCAAAGAAAAATGGCAAAAAGTAAAGAGCAATC
AGTAAAGAAAAATGATAAAGAGTAAAGAGTAAAG
Found at i:3512 original size:46 final size:46
Alignment explanation
Indices: 3449--3555 Score: 142
Period size: 46 Copynumber: 2.3 Consensus size: 46
3439 AAAATGGCAA
* **
3449 AAAGTAAAAGAGCAATCAGTAAAGTGAAATGATAAAGAGTAAAGAGT
1 AAAG-AAAAGAGTAATCAGTAAAGAAAAATGATAAAGAGTAAAGAGT
* *
3496 AAAGAAAAGAGTAATCAGTAAAGAAAAATGGTAAAGAGTAAATAGT
1 AAAGAAAAGAGTAATCAGTAAAGAAAAATGATAAAGAGTAAAGAGT
**
3542 AAAGAGTAGAGTAA
1 AAAGAAAAGAGTAA
3556 AGAGTAATCA
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
46 49 0.92
47 4 0.08
ACGTcount: A:0.57, C:0.03, G:0.23, T:0.17
Consensus pattern (46 bp):
AAAGAAAAGAGTAATCAGTAAAGAAAAATGATAAAGAGTAAAGAGT
Found at i:3535 original size:27 final size:26
Alignment explanation
Indices: 3501--3587 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 26
3491 AGAGTAAAGA
3501 AAAGAGTAATCAGTAAAGAAAAATGGT
1 AAAGAGTAATCAGTAAAG-AAAATGGT
**
3528 AAAGAGTAAAT-AGTAAAGAGTA-GAGT
1 AAAGAGT-AATCAGTAAAGAAAATG-GT
**
3554 AAAGAGTAATCAACAAAGGAAAATGGT
1 AAAGAGTAATCAGTAAA-GAAAATGGT
3581 AAAGAGT
1 AAAGAGT
3588 GAAGAGAGGT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
25 4 0.08
26 15 0.31
27 26 0.53
28 4 0.08
ACGTcount: A:0.55, C:0.03, G:0.24, T:0.17
Consensus pattern (26 bp):
AAAGAGTAATCAGTAAAGAAAATGGT
Found at i:3544 original size:53 final size:53
Alignment explanation
Indices: 3481--3593 Score: 163
Period size: 53 Copynumber: 2.1 Consensus size: 53
3471 AGTGAAATGA
**
3481 TAAAGAGTAAAGAGTAAAGAAAAGAGTAATCAGTAAAGAAAAATGGTAAAGAG
1 TAAAGAGTAAAGAGTAAAGAAAAGAGTAATCAACAAAGAAAAATGGTAAAGAG
* * * *
3534 TAAATAGTAAAGAGTAGAGTAAAGAGTAATCAACAAAGGAAAATGGTAAAGAG
1 TAAAGAGTAAAGAGTAAAGAAAAGAGTAATCAACAAAGAAAAATGGTAAAGAG
*
3587 TGAAGAG
1 TAAAGAG
3594 AGGTCAGTAA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.56, C:0.03, G:0.26, T:0.16
Consensus pattern (53 bp):
TAAAGAGTAAAGAGTAAAGAAAAGAGTAATCAACAAAGAAAAATGGTAAAGAG
Found at i:3593 original size:34 final size:34
Alignment explanation
Indices: 3549--3673 Score: 128
Period size: 34 Copynumber: 3.6 Consensus size: 34
3539 AGTAAAGAGT
**
3549 AGAGTAAAGAGTAATCAACAAAGGAAAATGGTAA
1 AGAGTAAAGAGTAATCAGTAAAGGAAAATGGTAA
* * *
3583 AGAGTGAAGAG-AGGTCAGTAAA-GAAGAATGGTGA
1 AGAGTAAAGAGTA-ATCAGTAAAGGAA-AATGGTAA
* *
3617 AGAGTAAAGAGTAATCAGTAAAGAAAAATGGTAT
1 AGAGTAAAGAGTAATCAGTAAAGGAAAATGGTAA
* *
3651 AGAGTAAAATATTAATCAGTAAA
1 AGAGT-AAAGAGTAATCAGTAAA
3674 AAGTAAATGG
Statistics
Matches: 74, Mismatches: 12, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
33 4 0.05
34 52 0.70
35 18 0.24
ACGTcount: A:0.52, C:0.04, G:0.26, T:0.18
Consensus pattern (34 bp):
AGAGTAAAGAGTAATCAGTAAAGGAAAATGGTAA
Found at i:3727 original size:50 final size:49
Alignment explanation
Indices: 3663--3777 Score: 135
Period size: 50 Copynumber: 2.3 Consensus size: 49
3653 AGTAAAATAT
* *
3663 TAATCAGTAAAAAGTAAATG-GCAATCAGTAAAGAATA-AAATAGTAATTAG
1 TAATCAGTAAAAAGTAAA-GAACAATCAGT-AA-AATAGAAATAGTAATAAG
* * *
3713 TAATCAGTACAAAGTAAAGAATAATCAGTAAAATAGTAATAGTAATAAG
1 TAATCAGTAAAAAGTAAAGAACAATCAGTAAAATAGAAATAGTAATAAG
3762 TAATTCAGTAAAAAGT
1 TAA-TCAGTAAAAAGT
3778 GAGTAAAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
48 4 0.07
49 17 0.30
50 35 0.62
ACGTcount: A:0.54, C:0.06, G:0.15, T:0.25
Consensus pattern (49 bp):
TAATCAGTAAAAAGTAAAGAACAATCAGTAAAATAGAAATAGTAATAAG
Found at i:3729 original size:21 final size:21
Alignment explanation
Indices: 3698--3764 Score: 75
Period size: 21 Copynumber: 3.1 Consensus size: 21
3688 CAGTAAAGAA
3698 TAAAATAGTAATTAGTAATCAG
1 TAAAATAGTAA-TAGTAATCAG
*
3720 TACAA-AGTAA-AGAATAATCAG
1 TAAAATAGTAATAG--TAATCAG
*
3741 TAAAATAGTAATAGTAATAAG
1 TAAAATAGTAATAGTAATCAG
3762 TAA
1 TAA
3765 TTCAGTAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
19 2 0.05
21 25 0.66
22 9 0.24
23 2 0.05
ACGTcount: A:0.55, C:0.04, G:0.13, T:0.27
Consensus pattern (21 bp):
TAAAATAGTAATAGTAATCAG
Found at i:3730 original size:29 final size:28
Alignment explanation
Indices: 3668--3730 Score: 65
Period size: 29 Copynumber: 2.2 Consensus size: 28
3658 AATATTAATC
*
3668 AGTAAAAAGTAAATGGCAATCAGTAAAG
1 AGTAAAAAGTAAATAGCAATCAGTAAAG
* * *
3696 AATAAAATAGTAATTAGTAATCAGTACAA-
1 AGTAAAA-AGTAAATAGCAATCAGTA-AAG
3725 AGTAAA
1 AGTAAA
3731 GAATAATCAG
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
28 6 0.21
29 20 0.71
30 2 0.07
ACGTcount: A:0.56, C:0.06, G:0.16, T:0.22
Consensus pattern (28 bp):
AGTAAAAAGTAAATAGCAATCAGTAAAG
Found at i:3750 original size:36 final size:34
Alignment explanation
Indices: 3689--3764 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 34
3679 AATGGCAATC
*
3689 AGTAAAGAATAAAATAGTAATTAGTAATCAGTACA-A
1 AGTAAAGAAT-AAATAGTAAATAGTAAT-AGTA-ATA
3725 AGTAAAGAAT-AATCAGTAAAATAGTAATAGTAATA
1 AGTAAAGAATAAAT-AGT-AAATAGTAATAGTAATA
3760 AGTAA
1 AGTAA
3765 TTCAGTAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
34 4 0.11
35 13 0.36
36 19 0.53
ACGTcount: A:0.57, C:0.04, G:0.14, T:0.25
Consensus pattern (34 bp):
AGTAAAGAATAAATAGTAAATAGTAATAGTAATA
Found at i:6246 original size:40 final size:40
Alignment explanation
Indices: 6191--6342 Score: 196
Period size: 40 Copynumber: 4.0 Consensus size: 40
6181 TAAGGGTCCG
*
6191 ATCTTTTAATTTGGCCAAATAAGGGCCTAACGTTATCGAA
1 ATCTTTTGATTTGGCCAAATAAGGGCCTAACGTTATCGAA
*
6231 ATCTTTTGATTTGGCCAAGTAAGGGCCTAACGTTATCGAA
1 ATCTTTTGATTTGGCCAAATAAGGGCCTAACGTTATCGAA
* *
6271 A----ATG--CT-G--AAATAAGGGCCTAACGTTATCGAA
1 ATCTTTTGATTTGGCCAAATAAGGGCCTAACGTTATCGAA
*
6302 ATCTTTTGATTTGGCCAAGTAAGGGCCTAACGTTATCGAA
1 ATCTTTTGATTTGGCCAAATAAGGGCCTAACGTTATCGAA
6342 A
1 A
6343 ATGCTGAAAT
Statistics
Matches: 95, Mismatches: 8, Indels: 18
0.79 0.07 0.15
Matches are distributed among these distances:
31 24 0.25
33 1 0.01
34 1 0.01
35 2 0.02
36 2 0.02
37 1 0.01
38 1 0.01
40 63 0.66
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (40 bp):
ATCTTTTGATTTGGCCAAATAAGGGCCTAACGTTATCGAA
Found at i:6288 original size:31 final size:31
Alignment explanation
Indices: 6250--6357 Score: 108
Period size: 31 Copynumber: 3.2 Consensus size: 31
6240 TTTGGCCAAG
6250 TAAGGGCCTAACGTTATCGAAAATGCTGAAA
1 TAAGGGCCTAACGTTATCGAAAATGCTGAAA
* * *
6281 TAAGGGCCTAACGTTATCGAAATCTTTTGATTTGGCCAAG
1 TAAGGGCCTAACGTTATCGAAA----ATG--CT-G--AAA
6321 TAAGGGCCTAACGTTATCGAAAATGCTGAAA
1 TAAGGGCCTAACGTTATCGAAAATGCTGAAA
6352 TAAGGG
1 TAAGGG
6358 TCTGACATCA
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
31 30 0.48
33 1 0.02
34 1 0.02
35 2 0.03
36 2 0.03
37 1 0.02
38 1 0.02
40 24 0.39
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (31 bp):
TAAGGGCCTAACGTTATCGAAAATGCTGAAA
Found at i:6295 original size:71 final size:71
Alignment explanation
Indices: 6207--6357 Score: 302
Period size: 71 Copynumber: 2.1 Consensus size: 71
6197 TAATTTGGCC
6207 AAATAAGGGCCTAACGTTATCGAAATCTTTTGATTTGGCCAAGTAAGGGCCTAACGTTATCGAAA
1 AAATAAGGGCCTAACGTTATCGAAATCTTTTGATTTGGCCAAGTAAGGGCCTAACGTTATCGAAA
6272 ATGCTG
66 ATGCTG
6278 AAATAAGGGCCTAACGTTATCGAAATCTTTTGATTTGGCCAAGTAAGGGCCTAACGTTATCGAAA
1 AAATAAGGGCCTAACGTTATCGAAATCTTTTGATTTGGCCAAGTAAGGGCCTAACGTTATCGAAA
6343 ATGCTG
66 ATGCTG
6349 AAATAAGGG
1 AAATAAGGG
6358 TCTGACATCA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 80 1.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (71 bp):
AAATAAGGGCCTAACGTTATCGAAATCTTTTGATTTGGCCAAGTAAGGGCCTAACGTTATCGAAA
ATGCTG
Found at i:6438 original size:31 final size:31
Alignment explanation
Indices: 6403--6502 Score: 91
Period size: 31 Copynumber: 3.3 Consensus size: 31
6393 GATGTCAGAC
6403 CCTTATTTGAGCATTTTGGCAAACATTAGGT
1 CCTTATTTGAGCATTTTGGCAAACATTAGGT
** * **
6434 CCTTATTTG-GCCA-AAT--CAAAAGATCGGGT
1 CCTTATTTGAG-CATTTTGGC-AAACATTAGGT
* *
6463 CCTTATTTGAGCATTTTGGCAAACGTTAGGC
1 CCTTATTTGAGCATTTTGGCAAACATTAGGT
6494 CCTTATTTG
1 CCTTATTTG
6503 GCCAAATTAA
Statistics
Matches: 51, Mismatches: 12, Indels: 12
0.68 0.16 0.16
Matches are distributed among these distances:
28 1 0.02
29 19 0.37
30 4 0.08
31 26 0.51
32 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (31 bp):
CCTTATTTGAGCATTTTGGCAAACATTAGGT
Found at i:6498 original size:60 final size:60
Alignment explanation
Indices: 6403--6562 Score: 248
Period size: 60 Copynumber: 2.7 Consensus size: 60
6393 GATGTCAGAC
*
6403 CCTTATTTGAGCATTTTGGCAAACATTAGGTCCTTATTTGGCCAAATCAAAAGATCGGGT
1 CCTTATTTGAGCATTTTGGCAAACATTAGGCCCTTATTTGGCCAAATCAAAAGATCGGGT
* *
6463 CCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGGGT
1 CCTTATTTGAGCATTTTGGCAAACATTAGGCCCTTATTTGGCCAAATCAAAAGATCGGGT
* * * * *
6523 CTTTATTTGAGTATTTTCGTAAACATTAGACCCTTATTTG
1 CCTTATTTGAGCATTTTGGCAAACATTAGGCCCTTATTTG
6563 AGCAATTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 91 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (60 bp):
CCTTATTTGAGCATTTTGGCAAACATTAGGCCCTTATTTGGCCAAATCAAAAGATCGGGT
Found at i:7620 original size:3 final size:3
Alignment explanation
Indices: 7612--7643 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7602 AATTCTCAAC
7612 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
7644 ATATATATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:11113 original size:3 final size:3
Alignment explanation
Indices: 11105--11133 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
11095 ATGTTTTTAA
11105 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
11134 CAACAATGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:12028 original size:18 final size:18
Alignment explanation
Indices: 12002--12040 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
11992 TCATATTTAC
*
12002 ATTGGTTAATAAAGAAAA
1 ATTGCTTAATAAAGAAAA
*
12020 ATTGCTTAATAAAGAAGA
1 ATTGCTTAATAAAGAAAA
12038 ATT
1 ATT
12041 AAGTACTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.03, G:0.15, T:0.31
Consensus pattern (18 bp):
ATTGCTTAATAAAGAAAA
Found at i:15920 original size:41 final size:41
Alignment explanation
Indices: 15875--16123 Score: 285
Period size: 41 Copynumber: 6.1 Consensus size: 41
15865 TCATATGCAT
* * *
15875 AAAGTAAACACAGTTAAAGTCTTAATTCAGTGTAATTGAGA
1 AAAGTAAACACAGTCAAAGTCTTAATTCAGGGTAATTAAGA
*
15916 AAAGTAAACACAGTCAAAGTCTTAATTCAAGGTAATTAAGA
1 AAAGTAAACACAGTCAAAGTCTTAATTCAGGGTAATTAAGA
* ***
15957 AAGGTAAATGTAGTCAAAGTCTTAATTCAGGGTAATTAAGA
1 AAAGTAAACACAGTCAAAGTCTTAATTCAGGGTAATTAAGA
* * *
15998 AAGGTAAACAAAGTCAAGGTCTTAATTCAGGGTAATTAAGA
1 AAAGTAAACACAGTCAAAGTCTTAATTCAGGGTAATTAAGA
* *
16039 AAGGTAAACAC-GATCAAAGTCTTAATTCAGGGAAATT----
1 AAAGTAAACACAG-TCAAAGTCTTAATTCAGGGTAATTAAGA
* * *
16076 -AAGTAAACACAGTTAAAGGACTTAATTCAGGGAAATTAAGTA
1 AAAGTAAACACAGTCAAA-GTCTTAATTCAGGGTAATTAAG-A
16118 AAAGTA
1 AAAGTA
16124 GTTGAAGGAC
Statistics
Matches: 180, Mismatches: 19, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
36 13 0.07
37 19 0.11
40 1 0.01
41 142 0.79
43 5 0.03
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.26
Consensus pattern (41 bp):
AAAGTAAACACAGTCAAAGTCTTAATTCAGGGTAATTAAGA
Found at i:16109 original size:37 final size:37
Alignment explanation
Indices: 16059--16422 Score: 579
Period size: 37 Copynumber: 9.8 Consensus size: 37
16049 CGATCAAAGT
16059 CTTAATTCAGGGAAATTAAGTAAACA-CAGTTAAAGGA
1 CTTAATTCAGGGAAATTAAGTAAA-AGCAGTTAAAGGA
* *
16096 CTTAATTCAGGGAAATTAAGTAAAAGTAGTTGAAGGA
1 CTTAATTCAGGGAAATTAAGTAAAAGCAGTTAAAGGA
* *
16133 CTTAATTCAGGGAAATTAAGTAAAAGTAGTTGAAGGA
1 CTTAATTCAGGGAAATTAAGTAAAAGCAGTTAAAGGA
* *
16170 CTTAATTCGGGGAAATTAAGTAAAAGCAGTTGAAGGA
1 CTTAATTCAGGGAAATTAAGTAAAAGCAGTTAAAGGA
*
16207 CTTAATTCACGGAAAATTAAGTAAAAGCAGTTAAAGGA
1 CTTAATTCA-GGGAAATTAAGTAAAAGCAGTTAAAGGA
*
16245 CTTAATTCAGGGAAATTAAGTAAAAGCAGTTAAAGGG
1 CTTAATTCAGGGAAATTAAGTAAAAGCAGTTAAAGGA
16282 CTTAATTCAGGGAAATTAAGT-AAAGACAGTTAAAGGA
1 CTTAATTCAGGGAAATTAAGTAAAAG-CAGTTAAAGGA
*
16319 CTTAATTCAGAGAAATTAAGTAAAAGCAGTTAAAGGA
1 CTTAATTCAGGGAAATTAAGTAAAAGCAGTTAAAGGA
* * *
16356 ATTAATTCAGGGTAATTAAGTAAAAGCCGTTAAAGGA
1 CTTAATTCAGGGAAATTAAGTAAAAGCAGTTAAAGGA
16393 CTTAATTCAGGGAAATTAAGTAAAAGCAGT
1 CTTAATTCAGGGAAATTAAGTAAAAGCAGT
16423 CAAAAACTTA
Statistics
Matches: 305, Mismatches: 18, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
36 5 0.02
37 261 0.86
38 39 0.13
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.25
Consensus pattern (37 bp):
CTTAATTCAGGGAAATTAAGTAAAAGCAGTTAAAGGA
Found at i:16375 original size:186 final size:185
Alignment explanation
Indices: 16059--16422 Score: 579
Period size: 186 Copynumber: 2.0 Consensus size: 185
16049 CGATCAAAGT
*
16059 CTTAATTCAGGGAAATTAAGTAAACACAGTTAAAGGACTTAATTCAGGGAAATTAAGTAAAAGTA
1 CTTAATTCAGGGAAATTAAGTAAACACAGTTAAAGGACTTAATTCAGGGAAATTAAGTAAAAGCA
* * * * * *
16124 GTTGAAGGACTTAATTCAGGGAAATTAAGTAAAAGTAGTTGAAGGACTTAATTCGGGGAAATTAA
66 GTTAAAGGACTTAATTCAGAGAAATTAAGTAAAAGCAGTTAAAGGAATTAATTCAGGGAAATTAA
*
16189 GTAAAAGCAGTTGAAGGACTTAATTCACGGAAAATTAAGTAAAAGCAGTTAAAGGA
131 GTAAAAGCAGTTAAAGGACTTAATTCA-GGAAAATTAAGTAAAAGCAGTTAAAGGA
*
16245 CTTAATTCAGGGAAATTAAGTAAA-AGCAGTTAAAGGGCTTAATTCAGGGAAATTAAGT-AAAGA
1 CTTAATTCAGGGAAATTAAGTAAACA-CAGTTAAAGGACTTAATTCAGGGAAATTAAGTAAAAG-
*
16308 CAGTTAAAGGACTTAATTCAGAGAAATTAAGTAAAAGCAGTTAAAGGAATTAATTCAGGGTAATT
64 CAGTTAAAGGACTTAATTCAGAGAAATTAAGTAAAAGCAGTTAAAGGAATTAATTCAGGGAAATT
* *
16373 AAGTAAAAGCCGTTAAAGGACTTAATTCAGGGAAATTAAGTAAAAGCAGT
129 AAGTAAAAGCAGTTAAAGGACTTAATTCAGGAAAATTAAGTAAAAGCAGT
16423 CAAAAACTTA
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
185 25 0.15
186 139 0.85
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.25
Consensus pattern (185 bp):
CTTAATTCAGGGAAATTAAGTAAACACAGTTAAAGGACTTAATTCAGGGAAATTAAGTAAAAGCA
GTTAAAGGACTTAATTCAGAGAAATTAAGTAAAAGCAGTTAAAGGAATTAATTCAGGGAAATTAA
GTAAAAGCAGTTAAAGGACTTAATTCAGGAAAATTAAGTAAAAGCAGTTAAAGGA
Found at i:16882 original size:22 final size:22
Alignment explanation
Indices: 16857--16923 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
16847 TTCAGGGTAA
16857 TTAAGTAAAGACAAGCACAGAC
1 TTAAGTAAAGACAAGCACAGAC
*
16879 TTAATTTCAAAG--AAGCA-A-A-
1 TTAA-GT-AAAGACAAGCACAGAC
16898 TTAAGTAAAGACAAGCACAGAC
1 TTAAGTAAAGACAAGCACAGAC
16920 TTAA
1 TTAA
16924 TTTCAAGGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
17 4 0.11
18 1 0.03
19 9 0.25
20 2 0.06
21 2 0.06
22 13 0.36
23 1 0.03
24 4 0.11
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.19
Consensus pattern (22 bp):
TTAAGTAAAGACAAGCACAGAC
Found at i:16912 original size:41 final size:41
Alignment explanation
Indices: 16855--17260 Score: 596
Period size: 41 Copynumber: 10.1 Consensus size: 41
16845 AATTCAGGGT
* * *
16855 AATTAAGTAAAGACAAGCACAGACTTAATTTCAAAGAAGCA
1 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
*
16896 AATTAAGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
1 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
*
16937 AATTAGGTAAAGACAAGCACAAACTTAATTTCAAGGAAGGA
1 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
*
16978 AATTAGGTAAAGA-AAACACAGACTTAATTTC----AAGGA
1 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
*
17014 AATTCGGTAAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
1 AATTAGGT-AAAGACAAGCACAGACTTAATTTCAAGGAAGGA
*
17056 AATTAGGTAAAGAGAAGCACAGACTTAATTTC----AAGGA
1 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
* *
17093 AATTAGGTAATGACAAGCACAAACTTAATTTCAAGGAAGGA
1 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
* * *
17134 AATTAAGTAAAGACAAACACAGACTTAATTTCAAGAAAGGA
1 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
17175 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
1 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
* * *
17216 AATTAAGTAAAGACAAACACAAACTTAATTTCAAGGAAGGA
1 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
17257 AATT
1 AATT
17261 TGGTGGTGAA
Statistics
Matches: 331, Mismatches: 24, Indels: 20
0.88 0.06 0.05
Matches are distributed among these distances:
36 12 0.04
37 39 0.12
38 17 0.05
40 16 0.05
41 235 0.71
42 12 0.04
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.20
Consensus pattern (41 bp):
AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
Found at i:17035 original size:160 final size:161
Alignment explanation
Indices: 16855--17260 Score: 644
Period size: 160 Copynumber: 2.5 Consensus size: 161
16845 AATTCAGGGT
* * *
16855 AATTAAGTAAAGACAAGCACAGACTTAATTTCAAAGAAGCAAATTAAGTAAAGACAAGCACAGAC
1 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGAAATTAAGTAAAGACAAGCACAGAC
*
16920 TTAATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAAACTTAATTTCAAGGAAGGAAATTAGG
66 TTAATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAAACTTAATTTCAAGGAAGGAAATTAAG
16985 TAAAGA-AAACACAGACTTAATTTC-AAGGA
131 TAAAGACAAACACAGACTTAATTTCAAAGGA
* * *
17014 AATTCGGTAAAAGACAAGCACAGACTTAATTTCAAGGAAGGAAATTAGGTAAAGAGAAGCACAGA
1 AATTAGGT-AAAGACAAGCACAGACTTAATTTCAAGGAAGGAAATTAAGTAAAGACAAGCACAGA
*
17079 CTTAATTTC----AAGGAAATTAGGTAATGACAAGCACAAACTTAATTTCAAGGAAGGAAATTAA
65 CTTAATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAAACTTAATTTCAAGGAAGGAAATTAA
17140 GTAAAGACAAACACAGACTTAATTTCAAGAAAGGA
130 GTAAAGACAAACACAGACTTAATTTC---AAAGGA
* *
17175 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGAAATTAAGTAAAGACAAACACAAAC
1 AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGAAATTAAGTAAAGACAAGCACAGAC
17240 TTAATTTCAAGGAAGGAAATT
66 TTAATTTCAAGGAAGGAAATT
17261 TGGTGGTGAA
Statistics
Matches: 224, Mismatches: 13, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
156 57 0.25
157 18 0.08
159 6 0.03
160 122 0.54
161 12 0.05
164 9 0.04
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.20
Consensus pattern (161 bp):
AATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGAAATTAAGTAAAGACAAGCACAGAC
TTAATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAAACTTAATTTCAAGGAAGGAAATTAAG
TAAAGACAAACACAGACTTAATTTCAAAGGA
Found at i:17045 original size:119 final size:120
Alignment explanation
Indices: 16855--17253 Score: 569
Period size: 119 Copynumber: 3.3 Consensus size: 120
16845 AATTCAGGGT
* *
16855 AATTAAGTAAAGACAAGCACAGACTTAATTTCAAAGAAGCAAATTAAGTAAAGACAAGCACAGAC
1 AATTAAGTAAAGACAAACACAAACTTAATTTCAAAG--G-AAATTAAGTAAAGACAAGCACAGAC
*
16920 TTAATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAAACTTAATTTCAAGGAAGGA
63 TTAATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
* * **
16978 AATTAGGTAAAGA-AAACACAGACTTAATTTC-AAGGAAATTCGGTAAAAGACAAGCACAGACTT
1 AATTAAGTAAAGACAAACACAAACTTAATTTCAAAGGAAATTAAGT-AAAGACAAGCACAGACTT
*
17041 AATTTCAAGGAAGGAAATTAGGTAAAGAGAAGCACAGACTTAATTTC----AAGGA
65 AATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
* * * *
17093 AATTAGGTAATGACAAGCACAAACTTAATTTCAAGGAAGGAAATTAAGTAAAGACAAACACAGAC
1 AATTAAGTAAAGACAAACACAAACTTAATTTC-A--AAGGAAATTAAGTAAAGACAAGCACAGAC
*
17158 TTAATTTCAAGAAAGGAAATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
63 TTAATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
17216 AATTAAGTAAAGACAAACACAAACTTAATTTC-AAGGAA
1 AATTAAGTAAAGACAAACACAAACTTAATTTCAAAGGAA
17254 GGAAATTTGG
Statistics
Matches: 249, Mismatches: 17, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
115 17 0.07
116 16 0.06
118 7 0.03
119 132 0.53
120 11 0.04
121 3 0.01
122 17 0.07
123 46 0.18
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (120 bp):
AATTAAGTAAAGACAAACACAAACTTAATTTCAAAGGAAATTAAGTAAAGACAAGCACAGACTTA
ATTTCAAGGAAGGAAATTAGGTAAAGACAAGCACAGACTTAATTTCAAGGAAGGA
Found at i:17839 original size:37 final size:37
Alignment explanation
Indices: 17784--18015 Score: 181
Period size: 36 Copynumber: 6.3 Consensus size: 37
17774 CCCTAAAAAT
*
17784 CACAGACTTAATTTCAAGGAAATTAGGTAAAGACAAG
1 CACAGACTTAAATTCAAGGAAATTAGGTAAAGACAAG
* *
17821 CACATACTTAAATTCAAGGAAGGAAATTAGGTAAAGACCAG
1 CACAGACTTAAATTC----AAGGAAATTAGGTAAAGACAAG
* *
17862 AACAGACTTAATTTCAAGGAAATTAGGTAAAGACAAG
1 CACAGACTTAAATTCAAGGAAATTAGGTAAAGACAAG
* * * *
17899 CACAGACTT-AATTCAGGGTAATTAAGTAAAAATC-AG
1 CACAGACTTAAATTCAAGGAAATTAGGTAAAGA-CAAG
* * * * * *
17935 CAAAGGCTT-AATTCAAAGTAATTAAGTAAA-TCAA-
1 CACAGACTTAAATTCAAGGAAATTAGGTAAAGACAAG
* * * *
17969 CAAAGACTTAATTTCAAAGAAATTAAGTAAA-ATCAA-
1 CACAGACTTAAATTCAAGGAAATTAGGTAAAGA-CAAG
*
18005 CAAAGACTTAA
1 CACAGACTTAA
18016 TCCAAAGATG
Statistics
Matches: 165, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
34 9 0.05
35 20 0.12
36 60 0.36
37 43 0.26
41 33 0.20
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.23
Consensus pattern (37 bp):
CACAGACTTAAATTCAAGGAAATTAGGTAAAGACAAG
Found at i:17945 original size:36 final size:35
Alignment explanation
Indices: 17905--18272 Score: 195
Period size: 36 Copynumber: 10.6 Consensus size: 35
17895 CAAGCACAGA
*
17905 CTTAATTCAGGGTAATTAAGTAAAAATCAGCAAAGG
1 CTTAATTCAGGGTAATTAAGT-AAAATCAACAAAGG
** *
17941 CTTAATTCAAAGTAATTAAGT-AAATCAACAAAGA
1 CTTAATTCAGGGTAATTAAGTAAAATCAACAAAGG
** * *
17975 CTTAATTTCAAAGAAATTAAGTAAAATCAACAAAGA
1 CTTAA-TTCAGGGTAATTAAGTAAAATCAACAAAGG
* * * * * *
18011 CTTAATCCAAAGATGATTAAGCAAGATCAGACAAAGAG
1 CTTAATTC-AGGGTAATTAAGTAAAATCA-ACAAAG-G
** * * * *
18049 -TTAACCCAAGGG-GATTAAGT-AAA-GAA-AATGA
1 CTTAATTC-AGGGTAATTAAGTAAAATCAACAAAGG
* * * * *
18080 CTTAATTCAGGGTAATTAAGTAGAGTTAATAAACGT
1 CTTAATTCAGGGTAATTAAGTAAAATCAACAAA-GG
* *
18116 CTTAATTCAGGGTAATTAAGTAGAGT---C-AAGG
1 CTTAATTCAGGGTAATTAAGTAAAATCAACAAAGG
* *
18147 ACTTAATTCAGGGTAATTAAGTAGAGTCAACAAAGGG
1 -CTTAATTCAGGGTAATTAAGTAAAATCAACAAA-GG
* * * *
18184 CTTAATTCAGGGTAGTTAAGTAGAGT---CAAGGG
1 CTTAATTCAGGGTAATTAAGTAAAATCAACAAAGG
* * * * **
18216 CTTAATTCGGGGTAATTAAGTAGAGTCAATAAAAAA
1 CTTAATTCAGGGTAATTAAGTAAAATCAA-CAAAGG
*
18252 CTTAATTCAGGGCAATTAAGT
1 CTTAATTCAGGGTAATTAAGT
18273 GGAGTCAATA
Statistics
Matches: 270, Mismatches: 41, Indels: 42
0.76 0.12 0.12
Matches are distributed among these distances:
31 5 0.02
32 69 0.26
33 5 0.02
34 19 0.07
35 22 0.08
36 133 0.49
37 17 0.06
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.26
Consensus pattern (35 bp):
CTTAATTCAGGGTAATTAAGTAAAATCAACAAAGG
Found at i:18001 original size:70 final size:74
Alignment explanation
Indices: 17918--18052 Score: 188
Period size: 70 Copynumber: 1.9 Consensus size: 74
17908 AATTCAGGGT
* * * *
17918 AATTAAGTAAAAATCAGCAAAGGCTTAATTCAAAG-TAATTAAGTAA-ATCA-ACAAAGACTTAA
1 AATTAAGTAAAAATCAACAAAGACTTAATCCAAAGATAATTAAGCAAGATCAGACAAAGACTTAA
17980 TTTCAAAGA
66 TTTCAAAGA
* *
17989 AATTAAGT-AAAATCAACAAAGACTTAATCCAAAGATGATTAAGCAAGATCAGACAAAGAGTTAA
1 AATTAAGTAAAAATCAACAAAGACTTAATCCAAAGATAATTAAGCAAGATCAGACAAAGACTTAA
18053 CCCAAGGGGA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
70 23 0.42
71 17 0.31
72 4 0.07
73 11 0.20
ACGTcount: A:0.53, C:0.12, G:0.13, T:0.23
Consensus pattern (74 bp):
AATTAAGTAAAAATCAACAAAGACTTAATCCAAAGATAATTAAGCAAGATCAGACAAAGACTTAA
TTTCAAAGA
Found at i:18134 original size:68 final size:68
Alignment explanation
Indices: 18078--18280 Score: 298
Period size: 68 Copynumber: 3.0 Consensus size: 68
18068 TAAAGAAAAT
* * *
18078 GACTTAATTCAGGGTAATTAAGTAGAGTTAATAAACGTCTTAATTCAGGGTAATTAAGTAGAGTC
1 GACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAAGACTTAATTCAGGGTAATTAAGTAGAGTC
18143 AAG
66 AAG
* * * *
18146 GACTTAATTCAGGGTAATTAAGTAGAGTCAACAAAGGGCTTAATTCAGGGTAGTTAAGTAGAGTC
1 GACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAAGACTTAATTCAGGGTAATTAAGTAGAGTC
18211 AAG
66 AAG
* * * * *
18214 GGCTTAATTCGGGGTAATTAAGTAGAGTCAATAAAAAACTTAATTCAGGGCAATTAAGTGGAGTC
1 GACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAAGACTTAATTCAGGGTAATTAAGTAGAGTC
18279 AA
66 AA
18281 TAAAGAACTT
Statistics
Matches: 121, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 121 1.00
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (68 bp):
GACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAAGACTTAATTCAGGGTAATTAAGTAGAGTC
AAG
Found at i:18278 original size:36 final size:36
Alignment explanation
Indices: 18078--18293 Score: 259
Period size: 36 Copynumber: 6.2 Consensus size: 36
18068 TAAAGAAAAT
* *
18078 GACTTAATTCAGGGTAATTAAGTAGAGTTAATAAAC
1 GACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAG
*
18114 GTCTTAATTCAGGGTAATTAAGTAGAGTC----AAG
1 GACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAG
*
18146 GACTTAATTCAGGGTAATTAAGTAGAGTCAACAAAG
1 GACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAG
* *
18182 GGCTTAATTCAGGGTAGTTAAGTAGAGTC----AAG
1 GACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAG
* * *
18214 GGCTTAATTCGGGGTAATTAAGTAGAGTCAATAAAA
1 GACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAG
* * *
18250 AACTTAATTCAGGGCAATTAAGTGGAGTCAATAAAG
1 GACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAG
*
18286 AACTTAAT
1 GACTTAAT
18294 CTAAAAAGAG
Statistics
Matches: 157, Mismatches: 15, Indels: 16
0.84 0.08 0.09
Matches are distributed among these distances:
32 60 0.38
36 97 0.62
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (36 bp):
GACTTAATTCAGGGTAATTAAGTAGAGTCAATAAAG
Found at i:19483 original size:109 final size:109
Alignment explanation
Indices: 19291--19895 Score: 1036
Period size: 109 Copynumber: 5.5 Consensus size: 109
19281 AAGAAATTCG
* *
19291 AAAATTCGATTATATCAAAACTTCTTTTTAATGCCAAATTAAAAGAATTCAATCCAACGGTTGGT
1 AAAATTCGATTATATCAAAACTT-TTTTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGT
19356 ATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
65 ATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
*
19401 AAAATTCGATTATATCAAAACTTTTATTT-ATGCCAAATTAAAAGGATTTAATCCAACGGTTGGT
1 AAAATTCGATTATATCAAAACTTTT-TTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGT
19465 ATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
65 ATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
*
19510 AAAATTCGATTATATCAGAACTTTTTGTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGT
1 AAAATTCGATTATATCAAAACTTTTT-TTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGT
19575 ATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGT-A
65 ATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
* *
19619 AAAATTCGATTATATCAAAACTTCTTTTTGATGCCAAATTAAAAGAATTCAATCCAACTGTTGGT
1 AAAATTCGATTATATCAAAACTT-TTTTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGT
19684 ATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
65 ATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
*
19729 AAAATTCGATTATATCAAAACTTTTTTTTATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTA
1 AAAATTCGATTATATCAAAACTTTTTTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTA
* *
19794 TGACTATCCATGTGCTTCATCTTGAACTAATAGGATTTTAGT-A
66 TGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
* * *
19837 AAAATTTGATTATATCAAAACTTTTTTTTGATGTCAAATTAAAAGGATTCAGTCCAACG
1 AAAATTCGATTATATCAAAAC-TTTTTTTGATGCCAAATTAAAAGGATTCAATCCAACG
19896 CGGGGGTGCT
Statistics
Matches: 473, Mismatches: 16, Indels: 13
0.94 0.03 0.03
Matches are distributed among these distances:
108 22 0.05
109 321 0.68
110 130 0.27
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35
Consensus pattern (109 bp):
AAAATTCGATTATATCAAAACTTTTTTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTA
TGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
Found at i:19610 original size:219 final size:217
Alignment explanation
Indices: 19221--19895 Score: 1073
Period size: 219 Copynumber: 3.1 Consensus size: 217
19211 GGATTGAATC
* * * *
19221 TCAATCCAACGGTTGGTATGACGACCCATGTCCTTCATCTTAAACCAATAAGATTTTAGTAAGAA
1 TCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGT----A
*
19286 ATTCGAAAATTCGATTATATCAAAACTTCTTTTTAATGCCAAATTAAAAGAATTCAATCCAACGG
62 A----AAAATTCGATTATATCAAAACTT-TTTTTAATGCCAAATTAAAAGGATTCAATCCAACGG
19351 TTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAAATTCGATTATAT
122 TTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGT-AAAAATTCGATTATAT
19416 CAAAACTTTTATTT-ATGCCAAATTAAAAGGAT
186 CAAAACTTTT-TTTGATGCCAAATTAAAAGGAT
*
19448 TTAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
1 TCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
* *
19513 ATTCGATTATATCAGAACTTTTTGTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATG
66 ATTCGATTATATCAAAACTTTTT-TTAATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATG
19578 ACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAATTCGATTATATCAAAACTTC
130 ACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAATTCGATTATATCAAAACTT-
*
19643 TTTTTGATGCCAAATTAAAAGAAT
194 TTTTTGATGCCAAATTAAAAGGAT
*
19667 TCAATCCAACTGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
1 TCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
*
19732 ATTCGATTATATCAAAACTTTTTTTTATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATGA
66 ATTCGATTATATCAAAACTTTTTTTAATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATGA
* * *
19797 CTATCCATGTGCTTCATCTTGAACTAATAGGATTTTAGTAAAAATTTGATTATATCAAAACTTTT
131 CGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAATTCGATTATATCAAAAC-TTT
*
19862 TTTTGATGTCAAATTAAAAGGAT
195 TTTTGATGCCAAATTAAAAGGAT
*
19885 TCAGTCCAACG
1 TCAATCCAACG
19896 CGGGGGTGCT
Statistics
Matches: 424, Mismatches: 20, Indels: 17
0.92 0.04 0.04
Matches are distributed among these distances:
218 160 0.38
219 207 0.49
223 2 0.00
227 55 0.13
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (217 bp):
TCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
ATTCGATTATATCAAAACTTTTTTTAATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATGA
CGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAATTCGATTATATCAAAACTTTT
TTTGATGCCAAATTAAAAGGAT
Found at i:19828 original size:328 final size:329
Alignment explanation
Indices: 19221--19895 Score: 1129
Period size: 328 Copynumber: 2.0 Consensus size: 329
19211 GGATTGAATC
19221 TCAATCCAACGGTTGGTATGACGACCCATGTCCTTCATCTTAAACCAATAAGATTTTAGTAAGAA
1 TCAATCCAACGGTTGGTATGACGACCCATGTCCTTCATCTTAAACCAATAAGATTTTAGT----A
19286 ATTCGAAAATTCGATTATATCAAAACTTCTTTTTAATGCCAAATTAAAAGAATTCAATCCAACGG
62 A-T--AAAATTCGATTATATCAAAACTTCTTTTTAATGCCAAATTAAAAGAATTCAATCCAACGG
19351 TTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAAATTCGATTATAT
124 TTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAAATTCGATTATAT
*
19416 CAAAACTTTTATTTATGCCAAATTAAAAGGATTTAATCCAACGGTTGGTATGACGATCCATGTGC
189 CAAAACTTTTATTTATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATGACGATCCATGTGC
*
19481 TTCATCTTGAACCAATAGGATTTTAGTAAAAAATTCGATTATATCAGAACTTTTTGTTGATGCCA
254 TTCATCTTGAACCAATAGGATTTTAGT-AAAAATTCGATTATATCAAAACTTTTTGTTGATGCCA
19546 AATTAAAAGGAT
318 AATTAAAAGGAT
* * * *
19558 TCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGT-A-AA
1 TCAATCCAACGGTTGGTATGACGACCCATGTCCTTCATCTTAAACCAATAAGATTTTAGTAATAA
* *
19621 AATTCGATTATATCAAAACTTCTTTTTGATGCCAAATTAAAAGAATTCAATCCAACTGTTGGTAT
66 AATTCGATTATATCAAAACTTCTTTTTAATGCCAAATTAAAAGAATTCAATCCAACGGTTGGTAT
19686 GACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAAATTCGATTATATCAAAACT
131 GACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAAATTCGATTATATCAAAACT
* *
19751 TTTTTTTATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATGACTATCCATGTGCTTCATCT
196 TTTATTTATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCT
* * * *
19816 TGAACTAATAGGATTTTAGTAAAAATTTGATTATATCAAAACTTTTTTTTGATGTCAAATTAAAA
261 TGAACCAATAGGATTTTAGTAAAAATTCGATTATATCAAAACTTTTTGTTGATGCCAAATTAAAA
19881 GGAT
326 GGAT
*
19885 TCAGTCCAACG
1 TCAATCCAACG
19896 CGGGGGTGCT
Statistics
Matches: 323, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
327 55 0.17
328 211 0.65
332 1 0.00
337 56 0.17
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (329 bp):
TCAATCCAACGGTTGGTATGACGACCCATGTCCTTCATCTTAAACCAATAAGATTTTAGTAATAA
AATTCGATTATATCAAAACTTCTTTTTAATGCCAAATTAAAAGAATTCAATCCAACGGTTGGTAT
GACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAAATTCGATTATATCAAAACT
TTTATTTATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCT
TGAACCAATAGGATTTTAGTAAAAATTCGATTATATCAAAACTTTTTGTTGATGCCAAATTAAAA
GGAT
Found at i:20439 original size:108 final size:109
Alignment explanation
Indices: 20248--20845 Score: 954
Period size: 108 Copynumber: 5.5 Consensus size: 109
20238 AAAAAATTCG
* * *
20248 AAAATTCGATTATATCAAAATTTCTTTTTAATGCCAAATTAAAAGGATTCAATCCAATGGTTGGT
1 AAAATTCGATTATATCAAAACTT-TTTTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGT
**
20313 ATGATTATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
65 ATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
* * *
20358 AAAATTCGATTATATCAAAACTTTTTTT-ATGCCAAATTAAAAAGATTTAATCCAACGGTTCGTA
1 AAAATTCGATTATATCAAAACTTTTTTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTA
*
20422 TGACGATCCATGTGCTTCATCTTGAACTAATAGGATTTTAGTAA
66 TGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
* *
20466 AAAATTCGATAATATCAAAACTTTTTTTTGGTGCCAAATTAAAAGGATTCAATCCAACGGTTGGT
1 AAAATTCGATTATATCAAAAC-TTTTTTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGT
* *
20531 ATGACGATCCATGTGCTTCATCTTGAACCACTAGGATTTTAGT-G
65 ATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
*
20575 AAAATTCGATTATATCAAAACTTTTTTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTG
1 AAAATTCGATTATATCAAAACTTTTTTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTA
20640 TGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
66 TGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
* * *
20684 AAAATTCGATTATTTCAAAA-TTTTTTTTATGCCAAATTAAAA-GATTCAATCCAACGGTTGATA
1 AAAATTCGATTATATCAAAACTTTTTTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTA
* *
20747 TGACTATCCATGTGCTTCATCTTGAACTAATAGGATTTTAGT-A
66 TGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
* *
20790 AAAATTTGATTATATCAAAACTTTTTTTGAAGCCAAATTAAAAGGATTCAATCCAA
1 AAAATTCGATTATATCAAAACTTTTTTTGATGCCAAATTAAAAGGATTCAATCCAA
20846 TACTTCTCCA
Statistics
Matches: 452, Mismatches: 31, Indels: 12
0.91 0.06 0.02
Matches are distributed among these distances:
106 19 0.04
107 79 0.17
108 209 0.46
109 51 0.11
110 94 0.21
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (109 bp):
AAAATTCGATTATATCAAAACTTTTTTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTA
TGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAA
Found at i:20831 original size:215 final size:217
Alignment explanation
Indices: 20178--20845 Score: 1011
Period size: 218 Copynumber: 3.0 Consensus size: 217
20168 GCATTGAATC
* * *
20178 TCAATCAAACGGTTGGTATGACGACCCATGT-CATTCATCTTAAACCAATAGGATTTTAGTAAAA
1 TCAATCCAACGGTTGGTATGACGATCCATGTGC-TTCATCTTGAACCAATAGGATTTTAGTAAAA
*
20242 AATTCGAAAATTCGATTATATCAAAATTTCTTTTTAATGCCAAATTAAAAGGATTCAATCCAATG
65 AATTCG---ATT--A-T-T-TCAAAATTT-TTTTTAATGCCAAATTAAAAGGATTCAATCCAACG
*
20307 GTTGGTATGATTATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAAATTCGATTATA
121 GTTGGTATGACTATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGT-AAAAATTCGATTATA
*
20372 TCAAAACTTTTTTT-ATGCCAAATTAAAAAGAT
185 TCAAAACTTTTTTTGATGCCAAATTAAAAGGAT
* * *
20404 TTAATCCAACGGTTCGTATGACGATCCATGTGCTTCATCTTGAACTAATAGGATTTTAGTAAAAA
1 TCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
* * **
20469 ATTCGATAATATCAAAACTTTTTTTTGGTGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATG
66 ATTCGATTATTTCAAAA-TTTTTTTTAATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATG
* * *
20534 ACGATCCATGTGCTTCATCTTGAACCACTAGGATTTTAGTGAAAATTCGATTATATCAAAACTTT
130 ACTATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAATTCGATTATATCAAAACTTT
20599 TTTTGATGCCAAATTAAAAGGAT
195 TTTTGATGCCAAATTAAAAGGAT
*
20622 TCAATCCAACGGTTGGTGTGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
1 TCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
*
20687 ATTCGATTATTTCAAAATTTTTTTT-ATGCCAAATTAAAA-GATTCAATCCAACGGTTGATATGA
66 ATTCGATTATTTCAAAATTTTTTTTAATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATGA
* *
20750 CTATCCATGTGCTTCATCTTGAACTAATAGGATTTTAGTAAAAATTTGATTATATCAAAACTTTT
131 CTATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAATTCGATTATATCAAAACTTTT
*
20815 TTTGAAGCCAAATTAAAAGGAT
196 TTTGATGCCAAATTAAAAGGAT
20837 TCAATCCAA
1 TCAATCCAA
20846 TACTTCTCCA
Statistics
Matches: 409, Mismatches: 30, Indels: 17
0.90 0.07 0.04
Matches are distributed among these distances:
215 113 0.28
216 13 0.03
217 36 0.09
218 177 0.43
219 3 0.01
220 1 0.00
221 1 0.00
223 2 0.00
226 62 0.15
227 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35
Consensus pattern (217 bp):
TCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
ATTCGATTATTTCAAAATTTTTTTTAATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATGA
CTATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAATTCGATTATATCAAAACTTTT
TTTGATGCCAAATTAAAAGGAT
Found at i:21287 original size:110 final size:109
Alignment explanation
Indices: 21140--21583 Score: 691
Period size: 110 Copynumber: 4.1 Consensus size: 109
21130 GCATTGAATC
* * * *
21140 TCAATCAAACGGTTGGTATGACGACCCATGT-CGTTCATCTTAAACCAATAAGATTTTAGTAAAA
1 TCAATCCAACGGTTGGTATGACGATCCATGTGC-TTCATCTTGAACCAATAGGATTTTAGTAAAA
21204 AATTCGATTATATCAAAACTTCTTTTTAATGCCAAATTAAAAGGAT
65 AATTCGATTATATCAAAACTT-TTTTTAATGCCAAATTAAAAGGAT
*
21250 TCAATCCAACGGTTGGTATGACGATCCATATGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
1 TCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
* *
21315 ATTCGATTATATCAAAAC-ATTTTT-ATGCCAAATTAAAAAGAT
66 ATTCGATTATATCAAAACTTTTTTTAATGCCAAATTAAAAGGAT
*
21357 TTAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
1 TCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
*
21422 ATTCGATTATATCAAAACTTTTTTTTGATGCCAAATTAAAAGGAT
66 ATTCGATTATATCAAAAC-TTTTTTTAATGCCAAATTAAAAGGAT
* * *
21467 TCAATCCAACGGTTGATATGACTATCCATGTGCTTCATCTTGAACTAATAGGATTTTAGT-AAAA
1 TCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
* *
21531 ATTTGATTATATCAAAACATTTTTTGAA-GCCAAATTAAAAGGAT
66 ATTCGATTATATCAAAAC-TTTTTTTAATGCCAAATTAAAAGGAT
21575 TCAATCCAA
1 TCAATCCAA
21584 TACTTCTCCA
Statistics
Matches: 311, Mismatches: 19, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
107 98 0.32
108 30 0.10
109 33 0.11
110 149 0.48
111 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.34
Consensus pattern (109 bp):
TCAATCCAACGGTTGGTATGACGATCCATGTGCTTCATCTTGAACCAATAGGATTTTAGTAAAAA
ATTCGATTATATCAAAACTTTTTTTAATGCCAAATTAAAAGGAT
Found at i:21522 original size:217 final size:218
Alignment explanation
Indices: 21140--21583 Score: 723
Period size: 217 Copynumber: 2.0 Consensus size: 218
21130 GCATTGAATC
*
21140 TCAATCAAACGGTTGGTATGACGACCCATGTCGTTCATCTTAAACCAATAAGATTTTAGTAAAAA
1 TCAATCCAACGGTTGGTATGACGACCCATGTCGTTCATCTTAAACCAATAAGATTTTAGTAAAAA
*
21205 ATTCGATTATATCAAAACTTCTTTTTAATGCCAAATTAAAAGGATTCAATCCAACGGTTGGTATG
66 ATTCGATTATATCAAAACTTCTTTTTAATGCCAAATTAAAAGGATTCAATCCAACGGTTGATATG
21270 ACGATCCATATGCTTCATCTTGAACCAATAGGATTTTAGTAAAAAATTCGATTATATCAAAACA-
131 ACGATCCATATGCTTCATCTTGAACCAATAGGATTTTAGT-AAAAATTCGATTATATCAAAACAT
*
21334 TTTTT-ATGCCAAATTAAAAAGAT
195 TTTTTGAAGCCAAATTAAAAAGAT
* * * *
21357 TTAATCCAACGGTTGGTATGACGATCCATGT-GCTTCATCTTGAACCAATAGGATTTTAGTAAAA
1 TCAATCCAACGGTTGGTATGACGACCCATGTCG-TTCATCTTAAACCAATAAGATTTTAGTAAAA
* *
21421 AATTCGATTATATCAAAACTTTTTTTTGATGCCAAATTAAAAGGATTCAATCCAACGGTTGATAT
65 AATTCGATTATATCAAAACTTCTTTTTAATGCCAAATTAAAAGGATTCAATCCAACGGTTGATAT
* * * *
21486 GACTATCCATGTGCTTCATCTTGAACTAATAGGATTTTAGTAAAAATTTGATTATATCAAAACAT
130 GACGATCCATATGCTTCATCTTGAACCAATAGGATTTTAGTAAAAATTCGATTATATCAAAACAT
*
21551 TTTTTGAAGCCAAATTAAAAGGAT
195 TTTTTGAAGCCAAATTAAAAAGAT
21575 TCAATCCAA
1 TCAATCCAA
21584 TACTTCTCCA
Statistics
Matches: 209, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
216 23 0.11
217 162 0.78
218 24 0.11
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.34
Consensus pattern (218 bp):
TCAATCCAACGGTTGGTATGACGACCCATGTCGTTCATCTTAAACCAATAAGATTTTAGTAAAAA
ATTCGATTATATCAAAACTTCTTTTTAATGCCAAATTAAAAGGATTCAATCCAACGGTTGATATG
ACGATCCATATGCTTCATCTTGAACCAATAGGATTTTAGTAAAAATTCGATTATATCAAAACATT
TTTTGAAGCCAAATTAAAAAGAT
Done.