Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007152.1 Corchorus capsularis cultivar CVL-1 contig07173, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33434

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1623--1654
6
5.5
6
96
3
57
31
0
12
56
1.37
3808--3839
16
2.0
16
93
0
55
43
9
12
34
1.75
6360--6408
3
16.3
3
100
0
98
32
0
0
67
0.91
8327--8390
31
2.1
31
85
5
87
48
3
18
29
1.64
8682--8747
17
3.6
17
69
16
51
39
3
0
57
1.14
9954--10011
30
1.9
30
92
0
98
36
15
10
37
1.82
10762--10797
18
2.0
18
88
0
54
58
2
19
19
1.52
14387--14943
284
2.0
273
92
4
927
30
17
13
38
1.88
20917--21221
38
7.8
37
77
10
270
51
6
15
26
1.67
20917--21196
153
1.8
155
85
5
397
51
6
15
26
1.68
21091--21183
45
2.1
45
87
4
134
48
9
16
25
1.76
21128--21152
8
3.1
8
100
0
50
52
12
12
24
1.72
21068--21221
82
1.8
85
86
4
224
51
6
16
25
1.68
21187--21294
32
3.3
31
84
5
117
53
3
18
24
1.60
20928--21252
153
2.1
150
81
10
356
51
5
15
26
1.66
21681--21770
22
4.2
22
85
5
130
57
5
18
17
1.59
21681--21792
22
5.5
21
78
13
110
59
4
19
16
1.53
21723--21821
25
3.8
25
74
11
83
60
2
19
18
1.46
23054--23165
58
1.9
59
90
3
181
29
16
12
41
1.84
29742--29772
1
31.0
1
100
0
62
0
0
0
100
0.00
30251--30329
31
2.5
31
80
8
97
34
10
16
39
1.82
32007--32034
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!