Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007153.1 Corchorus capsularis cultivar CVL-1 contig07174, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61761

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8464--8499
12
3.2
12
77
22
51
8
27
5
58
1.50
8583--8711
66
2.0
66
87
6
190
23
13
31
32
1.93
9490--9527
12
3.2
12
88
0
58
60
0
31
7
1.25
10059--10169
29
4.0
29
79
17
128
15
20
28
35
1.93
10066--10166
53
1.9
52
90
4
159
15
20
27
35
1.94
11997--12033
19
1.9
19
88
0
56
24
27
5
43
1.76
20414--20453
2
20.0
2
100
0
80
50
0
0
50
1.00
30126--30206
26
3.3
26
65
25
66
40
3
14
40
1.64
30173--30239
33
2.0
33
94
0
116
41
1
13
43
1.53
30128--30292
81
2.0
86
90
5
241
40
4
13
41
1.65
32625--33008
109
3.5
109
92
3
603
47
2
12
36
1.55
42771--42808
18
2.1
19
90
5
60
47
18
10
23
1.79
44615--44643
12
2.3
13
94
5
51
27
20
13
37
1.91
46828--46876
22
2.2
22
96
0
89
4
46
8
40
1.52
46993--47070
28
3.0
26
87
9
97
14
10
24
51
1.73
46979--47048
35
2.0
36
82
2
88
14
8
25
51
1.70
53887--53927
2
20.5
2
90
9
66
48
2
0
48
1.14
53939--53964
11
2.4
11
100
0
52
26
11
0
61
1.30
54999--55047
11
4.5
11
79
20
59
38
0
0
61
0.96
56097--56146
14
3.6
14
82
12
50
38
16
2
44
1.59
57393--57467
39
1.9
39
88
0
114
18
13
18
49
1.79

Tables:   1

The End!