Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007158.1 Corchorus capsularis cultivar CVL-1 contig07179, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18647

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1454--1596
41
3.4
41
73
14
139
23
9
26
40
1.84
14575--14683
47
2.3
47
95
0
191
25
21
25
27
1.99
14577--14655
25
3.3
25
71
16
85
29
22
25
22
1.99
14780--14859
25
3.3
25
70
10
85
27
21
26
25
1.99
14796--14869
22
3.2
22
70
10
67
27
17
24
31
1.97
14778--14886
47
2.3
47
95
0
191
24
19
26
29
1.98
14807--14881
22
3.3
22
69
10
69
21
18
30
29
1.97
14527--15150
203
3.1
203
95
0
1115
31
18
22
28
1.97
14981--15084
22
4.5
22
71
10
73
25
20
27
26
1.99
14981--15089
47
2.3
47
95
0
191
25
20
26
27
1.99
14983--15062
25
3.3
25
74
10
94
27
22
26
23
2.00
16410--16438
13
2.2
13
100
0
58
44
20
0
34
1.52
16709--16782
19
3.7
20
78
15
82
18
0
12
68
1.19
16722--16782
14
4.4
13
73
19
52
19
0
11
68
1.19
17072--17132
15
4.3
14
75
10
52
44
8
8
39
1.64
17072--17125
28
1.9
28
88
0
81
42
9
7
40
1.65
17080--17132
13
3.8
14
82
9
72
41
5
7
45
1.56
17189--17236
7
6.7
7
77
13
53
4
16
0
79
0.89
17190--17260
7
10.1
7
75
22
51
12
16
0
70
1.17

Tables:   1

The End!