Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007160.1 Corchorus capsularis cultivar CVL-1 contig07181, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9852
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31


Found at i:7049 original size:76 final size:76

Alignment explanation


    Indices: 6928--7078  Score: 189
    Period size: 76  Copynumber: 2.0  Consensus size: 76

       6918 CTTTAACGCC

                                       *         *                   *       
       6928 ATAAATTGACAGATTTGAAAGACTTGCGATTAATGAATAATATGACCATTGGAGGCAGATCTAAG
          1 ATAAATTGACAGATTTGAAAGACTTGCCATTAATGAAGAATATGACCATTGGAGGCAAATCTAAG

               *       
       6993 TATTTAAGGAA
         66 TATATAAGGAA

                                     *          **           *              *
       7004 ATAAATTGACAGATTTGAAAGA-TTTCCATTTAATGTGGAGA-ATGACCGTTGGAGGCAAATCTG
          1 ATAAATTGACAGATTTGAAAGACTTGCCA-TTAATGAAGA-ATATGACCATTGGAGGCAAATCTA

                        
       7067 AGTATATAAGGA
         64 AGTATATAAGGA

       7079 CCCATGAAAA


Statistics
Matches: 64,  Mismatches: 9, Indels: 4
        0.83            0.12        0.05

Matches are distributed among these distances:
  75    4  0.06
  76   59  0.92
  77    1  0.02

ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29


Consensus pattern (76 bp):   
ATAAATTGACAGATTTGAAAGACTTGCCATTAATGAAGAATATGACCATTGGAGGCAAATCTAAG
TATATAAGGAA
Done.