Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007161.1 Corchorus capsularis cultivar CVL-1 contig07182, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31831

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5527--5573
19
2.4
19
89
3
67
80
0
17
2
0.80
5581--5680
44
2.3
44
92
3
166
38
7
20
35
1.79
6546--6647
35
2.9
36
77
2
116
15
15
28
40
1.88
6532--6943
189
2.2
191
91
1
668
18
17
25
38
1.92
6820--7381
70
8.0
70
87
3
770
21
19
22
37
1.95
6820--7381
211
2.7
210
88
2
797
21
19
22
37
1.95
11120--11146
10
2.7
10
100
0
54
55
7
0
37
1.28
11230--11275
22
2.1
22
100
0
92
41
19
4
34
1.71
19895--19930
19
1.9
18
88
5
54
33
22
2
41
1.68
29838--29880
2
21.5
2
95
0
77
53
46
0
0
1.00

Tables:   1

The End!