Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007162.1 Corchorus capsularis cultivar CVL-1 contig07183, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29186

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4612--4676
22
3.0
22
95
0
112
38
16
10
33
1.84
4643--4744
23
4.5
23
80
1
91
38
13
8
39
1.76
4619--4952
22
15.6
21
71
15
124
34
14
10
41
1.79
4901--4952
20
2.6
20
93
0
86
26
17
13
42
1.86
5024--5343
44
7.2
43
69
15
163
33
15
10
41
1.80
5024--5188
87
1.9
86
82
8
210
31
13
10
44
1.77
5024--5233
22
9.5
22
72
11
126
31
13
10
43
1.78
5278--5417
22
6.4
21
71
14
88
36
19
7
36
1.81
5293--5417
44
2.8
44
75
9
103
37
19
8
34
1.83
5460--5548
46
1.9
46
84
4
117
40
17
7
33
1.79
5460--5604
44
3.3
43
84
7
157
37
17
8
35
1.82
5521--5634
44
2.6
44
84
5
142
38
16
7
36
1.78
5460--5636
22
8.0
22
73
12
128
38
17
8
35
1.80
5981--6067
38
2.3
38
88
2
122
56
13
16
13
1.68
7408--7457
24
2.1
24
96
0
91
58
24
6
12
1.56
9281--9352
14
4.9
15
70
17
53
45
1
1
51
1.18
9283--9361
13
5.5
14
72
12
54
45
2
1
50
1.23
13601--13626
2
13.0
2
100
0
52
50
0
0
50
1.00
17532--17580
21
2.4
21
80
6
57
26
8
26
38
1.84
18204--18307
31
3.4
31
82
2
111
32
25
22
20
1.97
21101--21163
22
2.9
22
80
2
65
28
15
7
47
1.74
21183--21237
22
2.4
23
81
3
67
38
18
12
30
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21263--21322
22
2.7
22
79
5
59
35
8
13
43
1.74
21306--21390
23
3.7
23
77
1
82
36
15
8
40
1.77
21417--21578
22
7.5
22
71
12
120
33
14
10
41
1.80
21132--22274
44
26.4
43
66
17
204
35
16
9
38
1.81
21684--21829
22
6.6
22
72
9
73
33
13
10
42
1.79
21704--21915
22
9.5
23
70
14
133
33
14
10
42
1.79
21952--22077
22
5.7
22
76
7
85
38
18
7
34
1.80
22113--22276
22
7.4
22
73
14
131
38
18
8
34
1.81
22145--22276
66
2.0
66
80
5
151
37
17
9
34
1.83
22445--22482
19
2.0
20
85
15
53
63
2
5
28
1.30
22624--22715
38
2.5
37
80
3
112
55
7
20
16
1.65
22842--22905
29
2.1
31
85
5
87
48
4
17
29
1.67

Tables:   1

The End!