Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007163.1 Corchorus capsularis cultivar CVL-1 contig07184, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85807

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--30
2
15.0
2
100
0
60
50
0
0
50
1.00
5088--5162
32
2.3
32
93
0
132
16
38
36
9
1.80
5220--5260
21
2.0
21
90
0
64
39
7
26
26
1.82
6244--6300
26
2.2
26
90
6
89
29
33
19
17
1.95
6253--6314
26
2.4
26
88
0
88
33
33
17
14
1.90
7452--7515
33
1.9
33
100
0
128
37
28
18
15
1.92
16614--16672
26
2.3
26
90
0
91
13
16
38
30
1.88
23235--23314
41
2.0
41
100
0
160
26
30
6
37
1.81
25132--25183
16
3.3
16
74
15
54
36
11
15
36
1.84
27999--28073
36
2.1
36
97
0
141
22
26
18
32
1.97
30652--30683
15
2.1
16
94
5
57
12
25
18
43
1.85
32184--32221
20
1.9
20
94
0
67
36
5
21
36
1.76
36111--36169
15
3.9
15
81
0
64
40
22
25
11
1.88
45391--45415
10
2.5
10
100
0
50
48
20
8
24
1.76
46335--46368
12
2.7
13
90
4
52
20
11
8
58
1.59
49238--49266
13
2.1
14
93
6
51
58
13
0
27
1.36
49229--49271
23
1.9
22
95
4
77
58
11
0
30
1.34
49458--49495
18
2.1
19
90
5
60
42
26
5
26
1.76
50915--50959
22
2.0
22
95
0
81
44
8
24
22
1.81
59346--59654
154
2.0
154
97
0
582
35
20
25
18
1.95
61134--61163
2
15.0
2
100
0
60
50
0
0
50
1.00
62134--62176
18
2.4
17
77
11
50
9
2
16
72
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64457--64488
1
32.0
1
100
0
64
100
0
0
0
0.00
66991--67021
16
1.9
16
93
0
53
64
19
6
9
1.45
69681--69893
70
3.1
69
87
6
297
50
7
15
26
1.70
71672--71711
19
2.1
19
90
0
62
32
5
50
12
1.62
76430--76509
31
2.6
32
78
6
92
31
11
20
37
1.87
76733--76788
26
2.2
26
93
6
96
66
8
5
19
1.39
80975--81009
18
1.9
18
88
0
52
5
14
31
48
1.67
81048--81151
2
56.0
2
70
17
55
46
1
0
51
1.12
81045--81142
9
11.3
9
71
14
64
43
2
0
54
1.12
81048--81143
11
8.7
11
77
0
93
44
2
0
53
1.12
81047--81122
33
2.3
33
88
0
116
43
1
0
55
1.08
82410--82919
22
23.6
22
68
13
116
36
15
9
39
1.79
82652--82731
23
3.5
23
87
1
117
41
15
6
37
1.72
82650--82919
44
6.3
44
73
14
147
34
15
9
40
1.79
83030--83415
22
17.4
22
68
12
155
33
16
10
39
1.82
83451--83587
22
6.1
22
74
9
107
40
19
6
33
1.78
85760--85788
15
1.9
15
100
0
58
58
0
0
41
0.98

Tables:   1

The End!