Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007164.1 Corchorus capsularis cultivar CVL-1 contig07185, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81567

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1655--1726
12
6.1
12
74
8
58
80
15
4
0
0.86
1646--1716
6
13.2
5
79
16
56
78
18
2
0
0.86
1655--1717
6
10.8
6
84
3
76
80
15
3
0
0.83
1734--1810
39
2.0
40
94
2
138
40
24
10
24
1.86
1819--1901
35
2.4
35
95
0
148
24
31
14
30
1.94
1886--1983
29
3.3
28
84
5
115
33
21
15
29
1.94
2061--2306
88
2.8
87
87
3
348
28
23
16
30
1.96
3875--3946
31
2.4
31
83
2
92
36
20
15
27
1.93
3958--4008
16
3.1
16
73
15
59
23
9
25
41
1.85
3946--4030
36
2.5
34
83
11
111
24
14
23
37
1.92
4541--4636
46
2.1
46
88
0
138
27
34
13
25
1.93
4688--4830
50
3.2
41
75
18
126
39
6
10
42
1.66
6036--6080
12
3.9
11
88
8
63
2
2
8
86
0.73
6034--6076
21
2.0
21
86
8
61
2
2
9
86
0.76
6034--6080
16
2.9
16
81
15
60
2
2
10
85
0.78
6045--6092
19
2.5
20
80
13
55
0
6
12
81
0.87
10638--10675
18
2.1
19
90
5
60
47
18
10
23
1.79
15459--15524
31
2.1
31
86
5
89
43
4
19
31
1.71
18359--18434
22
3.5
22
73
7
64
40
15
11
31
1.84
18318--18418
44
2.3
44
83
6
116
41
13
9
34
1.78
18422--18480
23
2.6
23
100
0
118
40
13
32
13
1.84
18488--18835
22
15.6
22
67
14
79
35
9
17
38
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18602--18835
66
3.6
65
73
9
183
32
9
16
41
1.81
18698--18837
44
3.2
44
75
11
119
35
11
15
37
1.84
18714--18858
22
6.5
22
76
12
84
34
11
14
40
1.81
20673--20731
28
2.1
28
83
0
73
20
18
23
37
1.94
20756--20812
29
2.0
29
92
0
96
31
10
26
31
1.90
28924--28950
12
2.2
12
100
0
54
22
11
0
66
1.22
29056--29126
31
2.2
32
85
10
99
35
9
16
38
1.82
29069--29128
31
1.9
31
96
0
111
35
11
16
36
1.85
29157--29235
37
2.1
38
90
4
124
35
8
18
36
1.83
29786--29827
21
2.0
21
95
0
75
52
2
7
38
1.42
33843--34014
94
1.8
94
91
2
283
31
14
19
34
1.92
39663--39752
45
2.0
45
97
0
171
23
40
14
22
1.90
41975--42076
52
1.9
53
88
2
152
37
27
18
16
1.93
42027--42095
31
2.3
30
79
2
84
34
28
18
17
1.94
47244--47284
17
2.5
17
88
4
57
82
0
14
2
0.76
49172--49213
1
42.0
1
100
0
84
100
0
0
0
0.00
50930--50954
11
2.3
11
100
0
50
16
8
36
40
1.77
63138--63180
16
2.9
15
83
10
52
0
4
11
83
0.78
64935--65097
31
5.5
31
73
12
110
19
22
25
33
1.97
74297--74322
2
13.0
2
100
0
52
50
0
0
50
1.00
80267--80324
22
2.6
22
78
10
64
46
25
22
5
1.72
80494--80554
31
2.0
31
87
6
90
31
16
4
47
1.68

Tables:   1

The End!