genome.fa.s7167.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007167.1 Corchorus capsularis cultivar CVL-1 contig07188, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40172

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2964--3019	3	18.7	3	100	0	112	0	32	0	67	0.91
11811--11854	22	2.0	22	86	8	63	40	11	4	43	1.61
11810--11961	62	2.5	62	90	0	232	34	13	9	42	1.77
11935--12507	22	26.5	22	70	12	260	35	16	10	38	1.82
12059--12144	45	1.9	45	83	4	111	39	15	12	32	1.85
12288--12337	19	2.9	17	75	13	57	44	16	8	32	1.76
11935--12507	44	13.2	43	70	11	287	35	16	10	38	1.82
12613--12733	22	5.5	22	74	9	86	33	14	10	42	1.80
12588--12733	44	3.3	44	73	7	134	32	13	10	43	1.78
14255--14300	22	2.1	22	88	8	67	32	13	10	43	1.78
14211--14362	62	2.5	62	92	0	241	35	13	9	41	1.77
14332--14934	22	27.9	22	67	12	209	36	15	9	38	1.80
14624--14659	11	3.2	11	84	7	54	47	2	5	44	1.41
14770--14897	63	2.0	65	81	4	152	36	14	8	40	1.76
14974--15094	22	5.5	22	76	3	100	33	14	9	42	1.78
14949--15076	44	2.9	44	74	4	132	32	14	10	42	1.78
15146--15241	38	2.6	37	81	3	129	55	11	19	13	1.68
15537--15579	13	3.5	13	81	18	56	44	0	11	44	1.40
15536--15590	23	2.4	23	87	6	76	41	0	9	49	1.34
15573--15603	3	10.7	3	93	6	55	35	0	0	64	0.94
15573--15600	14	2.0	14	100	0	56	35	0	0	64	0.94
18564--18679	42	2.8	42	79	0	115	36	21	19	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23307--23364	30	1.9	31	96	3	109	31	17	3	48	1.64
23307--23373	31	2.2	31	89	5	100	32	14	4	47	1.65
24440--24905	22	21.0	21	67	16	137	39	9	16	34	1.82
24440--24592	66	2.3	68	83	10	192	37	10	17	33	1.84
24440--24620	66	2.7	64	80	11	163	37	9	17	35	1.83
24773--24936	87	1.9	87	81	7	199	40	9	14	35	1.78
25084--25153	31	2.3	29	76	11	70	34	21	12	31	1.91
26568--26796	78	3.0	78	89	3	333	39	15	0	44	1.47

Tables:   1

The End!