Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007169.1 Corchorus capsularis cultivar CVL-1 contig07190, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39499

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1491--1535
13
3.5
13
84
3
65
20
13
8
57
1.62
1491--1535
12
3.6
12
79
8
54
20
13
8
57
1.62
1532--1563
6
5.5
6
96
3
57
28
0
15
56
1.40
2279--2303
9
2.8
9
100
0
50
92
0
0
8
0.40
9001--9025
12
2.1
12
100
0
50
0
20
32
48
1.50
13965--14000
18
2.0
18
100
0
72
44
11
5
38
1.63
14189--14235
3
15.7
3
100
0
94
34
0
0
65
0.93
18463--18617
32
4.8
32
86
1
202
50
29
12
6
1.65
18457--18617
16
10.1
15
71
12
88
50
29
13
6
1.67
18754--18841
32
2.8
32
85
3
115
40
38
9
11
1.73
18771--18826
15
3.6
15
76
9
58
41
35
7
16
1.75
18768--18859
17
5.6
17
75
11
86
36
41
10
10
1.75
19345--19375
15
2.1
15
100
0
62
35
19
12
32
1.90
20664--20710
22
2.1
22
100
0
94
44
23
8
23
1.80
21772--21897
57
2.2
58
91
4
202
40
11
8
39
1.72
21841--21914
25
2.9
26
75
4
78
41
13
5
39
1.67
21772--21915
57
2.5
56
85
8
150
41
11
7
39
1.69
22046--22084
6
7.0
6
83
16
57
48
0
17
33
1.48
22046--22075
10
2.9
10
95
5
51
50
0
16
33
1.46
22048--22081
16
2.2
15
94
5
59
50
0
17
32
1.47
27355--27481
63
2.0
63
98
0
245
30
14
16
38
1.88
29452--29546
42
2.3
42
92
0
154
31
15
24
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30032--30165
54
2.5
54
91
0
214
40
13
26
19
1.89
36445--36479
17
2.1
17
100
0
70
45
20
17
17
1.85

Tables:   1

The End!