Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007171.1 Corchorus capsularis cultivar CVL-1 contig07192, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11675

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
462--491
2
15.0
2
100
0
60
50
0
0
50
1.00
689--763
30
2.6
30
87
6
102
36
14
4
45
1.64
6179--6250
33
2.2
33
97
0
135
31
4
15
48
1.64
9617--10007
66
5.9
67
81
7
410
21
19
16
42
1.89
9603--10031
197
2.2
194
77
9
440
22
19
17
41
1.91
9617--10031
131
3.2
125
75
14
340
22
19
17
40
1.91
10163--10189
6
4.5
6
100
0
54
51
0
18
29
1.46
11572--11621
21
2.3
22
86
3
66
32
22
12
34
1.90
11488--11621
22
6.0
22
67
17
78
30
17
13
38
1.89

Tables:   1

The End!