Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007172.1 Corchorus capsularis cultivar CVL-1 contig07193, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18068
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.30


Found at i:2017 original size:21 final size:21

Alignment explanation


    Indices: 1993--2033  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1983 ACTGGCGGGC

                                 
       1993 TTTACTTGCTGAGGAAGGCGT
          1 TTTACTTGCTGAGGAAGGCGT

                                
       2014 TTTACTTGCTGAGGAAGGCG
          1 TTTACTTGCTGAGGAAGGCG

       2034 AACTCTACTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.20, C:0.15, G:0.34, T:0.32


Consensus pattern (21 bp):   
TTTACTTGCTGAGGAAGGCGT
Done.