Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007173.1 Corchorus capsularis cultivar CVL-1 contig07194, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31867

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
270--309
21
1.9
21
94
0
71
37
5
7
50
1.53
271--335
21
3.0
21
82
6
60
41
1
6
50
1.36
299--339
22
1.9
21
90
5
64
43
0
2
53
1.13
1158--1217
21
2.8
22
82
7
61
43
5
5
46
1.47
3402--3438
19
1.9
18
89
10
56
13
21
0
64
1.27
5220--5270
20
2.6
21
76
14
56
11
13
3
70
1.29
5757--5846
32
2.8
32
91
0
144
54
32
10
3
1.50
5751--5846
16
6.0
16
76
4
86
53
32
10
4
1.54
5983--6070
32
2.8
32
87
0
131
40
37
7
13
1.74
6000--6056
15
3.7
15
75
9
60
42
35
5
17
1.72
6022--6101
17
4.9
16
80
11
74
38
38
7
15
1.75
6061--6101
17
2.4
17
100
0
82
34
43
12
9
1.75
7170--7327
78
2.0
77
97
1
298
29
20
11
37
1.88
13333--13364
2
16.0
2
100
0
64
50
0
0
50
1.00
18611--18682
28
2.6
28
93
0
117
20
25
19
34
1.96
18988--19403
156
2.6
157
78
7
463
32
21
15
30
1.94
23332--23360
2
14.5
2
100
0
58
51
0
48
0
1.00
29287--29319
11
2.9
12
86
13
52
33
18
15
33
1.92

Tables:   1

The End!