genome.fa.s7174.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007174.1 Corchorus capsularis cultivar CVL-1 contig07195, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66499

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1240--1346	33	3.2	32	86	5	126	8	28	40	22	1.83
6329--6435	33	3.2	32	85	5	126	9	28	39	22	1.85
6862--6921	30	2.0	30	93	0	102	33	20	28	18	1.96
9285--9313	13	2.1	14	93	6	51	48	10	20	20	1.79
13262--13320	30	2.0	30	89	0	91	11	23	40	23	1.88
14942--15000	29	2.0	29	100	0	118	32	23	13	30	1.93
15302--15398	33	2.9	33	84	0	131	44	20	10	24	1.83
16452--16489	20	1.9	20	88	0	58	26	28	7	36	1.84
17830--17882	18	3.3	18	65	29	55	7	24	47	20	1.76
17830--17892	30	2.1	30	96	0	117	7	23	46	22	1.78
22513--22568	10	5.6	10	91	0	94	39	21	8	30	1.84
22514--22571	30	1.9	30	100	0	116	39	20	8	31	1.83
22952--22991	16	2.5	16	87	0	62	7	15	37	40	1.75
25121--25162	21	1.9	21	85	9	57	14	11	9	64	1.50
39058--39085	6	4.7	6	100	0	56	82	0	17	0	0.68
41846--41901	28	2.0	28	92	0	94	30	12	30	26	1.93
44824--44882	31	1.9	31	92	0	100	71	1	0	27	0.96
44826--44900	31	2.4	30	82	8	80	70	1	0	28	0.95
45699--45753	27	2.0	28	82	3	67	49	3	0	47	1.19
50730--50896	86	1.9	86	96	0	307	52	4	19	23	1.65
50816--50949	55	2.4	56	88	1	198	50	6	18	24	1.71
51083--51125	16	2.7	15	79	10	50	58	0	20	20	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51089--51163	38	1.9	41	86	8	111	58	2	18	20	1.51
51219--51436	32	6.7	32	72	21	136	57	2	22	17	1.53
51294--51436	36	4.6	32	79	16	144	58	1	23	17	1.47
51219--51375	74	2.1	73	80	11	178	56	3	22	17	1.55
51328--51436	55	2.0	54	89	7	157	59	0	22	17	1.43
51252--51324	22	3.4	22	79	7	87	54	4	21	19	1.60
51328--51444	30	4.0	29	74	15	100	59	1	22	16	1.45
51294--51436	15	9.3	15	67	25	86	58	1	23	17	1.47
51474--51714	54	4.5	54	94	2	407	47	9	19	23	1.79
51474--51714	107	2.2	106	93	4	412	47	9	19	23	1.79
51818--51850	17	2.0	17	94	5	59	54	6	27	12	1.60
51849--52202	67	5.1	67	87	8	492	47	7	20	24	1.75
52121--52153	9	3.6	9	95	4	57	57	0	30	12	1.35
54095--54386	75	4.0	71	89	6	458	38	17	10	34	1.84
54095--54386	74	4.0	72	91	4	460	38	17	10	34	1.84
54095--54386	146	2.0	144	91	4	478	38	17	10	34	1.84
55785--56154	184	2.0	184	99	0	731	44	6	12	36	1.69
59207--59496	63	4.5	63	81	8	266	32	13	24	29	1.93
59485--59613	49	2.6	49	79	4	136	35	13	29	20	1.92
61010--61036	2	13.5	2	100	0	54	48	0	0	51	1.00
61519--61567	24	2.0	24	92	0	80	6	10	22	61	1.50
66214--66256	21	2.0	21	100	0	86	39	13	18	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66240--66320	40	2.0	40	100	0	162	32	17	13	37	1.89
66327--66382	28	2.0	28	96	0	103	35	10	19	33	1.87

Tables:   1

The End!