Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007175.1 Corchorus capsularis cultivar CVL-1 contig07196, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65358

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--37
2
18.5
2
100
0
74
48
0
0
51
1.00
6900--6938
18
2.1
19
85
4
53
28
2
2
66
1.18
12552--12605
2
27.0
2
84
0
72
48
1
3
46
1.30
15264--15332
33
2.1
33
100
0
138
21
21
34
21
1.97
20896--20920
2
12.5
2
100
0
50
48
52
0
0
1.00
21915--21940
3
8.7
3
100
0
52
0
34
0
65
0.93
25372--25459
30
2.9
30
82
3
104
39
19
28
12
1.88
28523--28586
30
2.1
30
88
5
94
7
29
40
21
1.82
29212--29430
107
2.0
107
98
0
420
27
19
19
32
1.96
35134--35196
30
2.1
29
85
8
83
9
28
39
22
1.85
36055--36145
30
3.2
30
69
23
88
26
34
31
7
1.85
36082--36121
12
3.3
12
89
0
62
30
27
32
10
1.89
37126--37154
9
3.2
9
100
0
58
86
0
0
13
0.58
41487--41522
19
1.9
18
88
5
54
33
22
2
41
1.68
41686--41724
20
1.9
21
84
5
53
56
2
20
20
1.54
43494--43527
12
2.8
12
81
0
50
29
23
32
14
1.94
47543--47623
30
2.7
30
86
0
99
37
22
27
13
1.91
51443--51482
14
2.7
16
77
14
50
42
2
0
55
1.13
61635--61660
10
2.6
10
100
0
52
50
19
7
23
1.73

Tables:   1

The End!