Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007176.1 Corchorus capsularis cultivar CVL-1 contig07197, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42931

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1665--1733
27
2.6
27
88
0
93
43
24
18
13
1.86
4862--4900
15
2.5
15
87
4
51
61
5
7
25
1.44
11139--11310
85
2.0
85
97
0
326
37
22
27
12
1.90
20174--20248
39
1.9
39
91
5
125
49
5
34
10
1.60
23358--23453
21
4.9
21
69
17
80
38
15
4
41
1.67
23330--23477
56
2.6
56
96
0
269
38
16
6
37
1.76
24718--24748
2
15.5
2
100
0
62
48
0
0
51
1.00
27431--27762
80
3.8
90
77
11
303
31
25
16
25
1.96
28523--28553
4
7.8
4
100
0
62
51
22
0
25
1.48
28774--28857
27
3.1
27
65
19
75
15
34
15
34
1.89
41529--41610
35
2.3
35
91
0
128
37
17
7
37
1.77
41592--41631
21
1.9
21
89
0
62
42
15
0
42
1.46

Tables:   1

The End!