Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007178.1 Corchorus capsularis cultivar CVL-1 contig07199, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38494

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6371--6410
2
20.5
2
85
14
57
50
0
2
47
1.14
6526--6575
14
3.4
14
76
10
55
44
0
2
54
1.11
6610--6673
11
5.8
11
75
10
51
54
17
9
18
1.69
8850--8882
11
3.0
11
100
0
66
27
45
0
27
1.54
11279--11310
2
16.0
2
100
0
64
50
0
0
50
1.00
16607--17044
167
2.6
163
89
3
642
28
14
16
39
1.88
19019--19056
11
3.5
11
85
10
51
57
2
0
39
1.12
19370--19441
14
5.1
14
72
11
58
38
8
5
47
1.57
19370--19451
41
2.0
42
97
2
157
43
7
4
43
1.53
20237--20283
14
3.3
15
70
11
53
34
27
4
34
1.77
21011--21051
20
2.0
20
85
0
55
19
34
0
46
1.50
22916--23102
87
2.1
87
84
7
238
29
7
22
40
1.81
22933--23122
87
2.2
87
83
3
231
28
8
25
37
1.85
25725--25758
7
4.9
7
100
0
68
0
41
14
44
1.45
25780--25877
33
3.0
33
92
0
160
18
41
32
7
1.77
26590--26647
28
2.1
28
100
0
116
25
18
6
48
1.73
30960--31007
22
2.3
20
85
7
60
29
2
0
68
1.01
31498--31805
151
2.0
151
93
1
519
34
8
4
51
1.53
32600--32760
78
2.1
78
97
0
304
28
10
18
42
1.83
35332--35406
36
2.1
36
97
0
141
56
13
10
20
1.66

Tables:   1

The End!