Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000718.1 Corchorus capsularis cultivar CVL-1 contig00718, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 768

Length: 1280
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26


Found at i:1175 original size:6 final size:6

Alignment explanation


    Indices: 1156--1192  Score: 58
    Period size: 6  Copynumber: 6.3  Consensus size: 6

       1146 CTAAGCAAAG

                       *                                
       1156 TAAAT- TAAAGC TAAATC TAAATC TAAATC TAAATC TA
          1 TAAATC TAAATC TAAATC TAAATC TAAATC TAAATC TA

       1193 TAGCAATTAT


Statistics
Matches: 29,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
   5    4  0.14
   6   25  0.86

ACGTcount: A:0.51, C:0.14, G:0.03, T:0.32


Consensus pattern (6 bp):   
TAAATC

Done.