genome.fa.s7181.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007181.1 Corchorus capsularis cultivar CVL-1 contig07202, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94155

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2820	331	8.5	332	80	5	2868	36	14	14	34	1.86
3178--3207	15	1.9	16	93	6	53	53	3	0	43	1.17
17299--17340	22	2.0	21	86	9	59	19	11	9	59	1.59
19951--19985	18	1.9	18	100	0	70	17	17	11	54	1.71
21498--21537	18	2.2	18	86	0	53	30	2	25	42	1.68
26065--26248	92	2.0	92	100	0	368	29	19	18	32	1.96
26764--27065	157	1.9	157	97	0	577	33	7	15	42	1.76
28196--28233	11	3.5	11	89	10	51	39	0	2	57	1.12
34291--34336	21	2.3	19	86	13	74	45	21	10	21	1.82
34296--34337	21	2.0	21	100	0	84	42	23	9	23	1.83
34317--34867	286	1.9	287	96	0	1014	32	16	18	32	1.93
40259--40420	80	2.0	80	93	2	281	37	26	13	22	1.91
43464--43488	13	1.9	13	100	0	50	16	8	0	76	1.02
52555--52587	12	2.8	12	90	0	57	9	45	27	18	1.79
59201--59406	35	5.8	36	85	7	289	33	18	8	39	1.81
65623--65667	21	2.1	21	87	0	63	17	33	11	37	1.85
66305--66402	45	2.2	46	90	1	153	42	18	9	29	1.81
74030--74055	3	8.7	3	100	0	52	69	0	30	0	0.89
83429--83463	14	2.7	13	87	12	54	5	11	0	82	0.82
84725--84763	2	19.5	2	89	0	51	48	5	2	43	1.38
84982--85021	19	2.2	19	86	4	55	37	15	0	47	1.45
85820--85893	24	3.1	24	82	0	85	20	40	25	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91432--91471	20	2.0	19	85	9	53	45	15	0	40	1.46
92274--92344	24	3.0	24	91	0	115	22	39	25	12	1.89
92454--92527	31	2.3	32	86	9	98	28	0	21	50	1.49

Tables:   1

The End!