Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007183.1 Corchorus capsularis cultivar CVL-1 contig07204, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41368

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5178--5313
35
3.8
36
86
5
188
36
18
6
38
1.77
5178--5314
71
1.9
70
86
4
195
36
18
6
38
1.77
10346--10766
30
13.6
30
85
5
457
32
17
17
33
1.93
10346--10766
61
6.8
60
85
4
464
32
17
17
33
1.93
10346--10766
91
4.5
90
84
5
475
32
17
17
33
1.93
12066--12129
27
2.3
27
94
2
110
56
7
29
6
1.52
13049--13129
29
2.7
29
84
3
99
23
24
13
38
1.91
13819--13876
29
2.0
29
96
0
107
41
15
20
22
1.90
13979--14004
2
13.0
2
100
0
52
50
0
0
50
1.00
18917--18943
2
13.5
2
100
0
54
51
0
0
48
1.00
20712--20745
1
34.0
1
93
0
59
0
2
0
97
0.19
20976--21000
2
12.5
2
100
0
50
52
0
0
48
1.00
23915--23940
6
4.3
6
100
0
52
19
50
30
0
1.48
31139--31163
2
12.5
2
100
0
50
48
0
0
52
1.00
31182--31221
12
3.2
12
96
3
71
67
15
0
17
1.23
31232--31265
13
2.8
12
82
8
50
82
2
14
0
0.79
31233--31290
20
3.0
20
82
7
57
79
3
8
8
1.04
31255--31300
19
2.4
19
77
0
56
71
2
15
10
1.23
31605--31630
11
2.4
11
100
0
52
84
0
15
0
0.62
40481--40511
2
15.5
2
93
0
53
45
0
3
51
1.17

Tables:   1

The End!