Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007187.1 Corchorus capsularis cultivar CVL-1 contig07208, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24643

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
227--262
19
1.9
18
88
5
54
41
2
22
33
1.68
858--894
18
2.1
17
95
5
65
10
16
8
64
1.47
1595--1640
20
2.2
21
88
3
67
21
8
4
65
1.38
1902--1935
17
1.9
18
88
5
52
52
8
20
17
1.71
5500--5535
19
1.9
18
88
5
54
41
2
22
33
1.68
6131--6167
18
2.1
17
95
5
65
10
16
8
64
1.47
6883--6930
20
2.3
20
82
3
60
16
8
8
66
1.42
13078--13168
44
2.2
40
73
16
94
37
27
15
19
1.92
13092--13191
44
2.3
44
91
0
164
35
30
13
22
1.91
13470--13834
35
10.6
35
76
10
258
33
17
10
38
1.84
13470--13835
66
5.4
65
75
11
261
33
17
10
38
1.84
13653--13713
17
3.5
17
70
12
52
32
19
11
36
1.88
17184--17347
36
4.6
36
72
7
136
38
30
14
16
1.89
17253--17433
95
1.9
95
84
0
245
44
26
13
16
1.84
17355--17478
35
3.5
35
74
2
131
40
25
15
19
1.90
18931--18960
13
2.3
13
94
0
51
3
16
0
80
0.85
23954--23985
7
4.6
7
96
0
55
25
0
9
65
1.22

Tables:   1

The End!