Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01007190.1 Corchorus capsularis cultivar CVL-1 contig07211, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45638
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Found at i:3187 original size:65 final size:65
Alignment explanation
Indices: 3101--3258 Score: 201
Period size: 65 Copynumber: 2.4 Consensus size: 65
3091 GAGTAGCTAA
* * *
3101 ATCTTGTCAAGAAGA-ACACCAGAAGATGGTTTATCAAAGAGTTTTCAAAAATTGATCGGAAGAT
1 ATCTTGTCAAGAA-ATAAACCAGAAGATGGTTTATCAAAGAGTTTTCAAAAATGGATCGGAAGAC
3165 G
65 G
* * * * *
3166 ATCTTGTTAAGAAATATACCAGAAGATGGTTTCTCAAAGAGTTTTCAAAAGTGGATCGGGAGACG
1 ATCTTGTCAAGAAATAAACCAGAAGATGGTTTATCAAAGAGTTTTCAAAAATGGATCGGAAGACG
* * *
3231 ATATTATCAAGAAGTAAACCAGAAGATG
1 ATCTTGTCAAGAAATAAACCAGAAGATG
3259 TTTCCTTAGA
Statistics
Matches: 80, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
64 1 0.01
65 79 0.99
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (65 bp):
ATCTTGTCAAGAAATAAACCAGAAGATGGTTTATCAAAGAGTTTTCAAAAATGGATCGGAAGACG
Found at i:3661 original size:27 final size:27
Alignment explanation
Indices: 3631--3767 Score: 78
Period size: 27 Copynumber: 5.4 Consensus size: 27
3621 AAGGATAAGC
*
3631 GGAAGACAGTCCTTTTAAGATTGGATT
1 GGAAGACAGTCCTTTAAAGATTGGATT
* ** * *
3658 GGAAGACA---ATTCGAAGGTT-GATC
1 GGAAGACAGTCCTTTAAAGATTGGATT
3681 GGAAGAC-GATCCTTTAAAGATTGGATT
1 GGAAGACAG-TCCTTTAAAGATTGGATT
* ** * *
3708 GGAAGACA---ATTCGAAGGTT-GATC
1 GGAAGACAGTCCTTTAAAGATTGGATT
*
3731 GGAAGAC-GATCCTTTAAAGATTGAATT
1 GGAAGACAG-TCCTTTAAAGATTGGATT
3758 GGAAGACAGT
1 GGAAGACAGT
3768 TCTAAGGATA
Statistics
Matches: 77, Mismatches: 21, Indels: 24
0.63 0.17 0.20
Matches are distributed among these distances:
23 20 0.26
24 14 0.18
26 14 0.18
27 28 0.36
28 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (27 bp):
GGAAGACAGTCCTTTAAAGATTGGATT
Found at i:3664 original size:50 final size:50
Alignment explanation
Indices: 3603--3973 Score: 499
Period size: 50 Copynumber: 7.4 Consensus size: 50
3593 CTAAAGAATG
*
3603 GAATTGGAAGACAATTCGAAGGATAAGCGGAAGACAGTCCTTTTAAGATT
1 GAATTGGAAGACAATTCGAAGGATAAGCGGAAGACGGTCCTTTTAAGATT
* * * * * *
3653 GGATTGGAAGACAATTCGAAGGTTGATCGGAAGACGATCCTTTAAAGATT
1 GAATTGGAAGACAATTCGAAGGATAAGCGGAAGACGGTCCTTTTAAGATT
* * * * * *
3703 GGATTGGAAGACAATTCGAAGGTTGATCGGAAGACGATCCTTTAAAGATT
1 GAATTGGAAGACAATTCGAAGGATAAGCGGAAGACGGTCCTTTTAAGATT
* * * *
3753 GAATTGGAAGACAGTTCTAAGGATAAACGGAAGACGGTCCTTTTAAGATG
1 GAATTGGAAGACAATTCGAAGGATAAGCGGAAGACGGTCCTTTTAAGATT
* * *
3803 GAATTGGAAGACAGTTCAAAGGATAAGCAGAAGACGGTCCTTTTAAGATT
1 GAATTGGAAGACAATTCGAAGGATAAGCGGAAGACGGTCCTTTTAAGATT
* *
3853 GAATTGGAAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTTAAGATT
1 GAATTGGAAGACAATTCGAAGGATAAGCGGAAGACGGTCCTTTTAAGATT
** * * *
3903 GAATTTAAAGACAGTTCAAAGGATAAGTGGAAGACGGTCCTTTTAAGATT
1 GAATTGGAAGACAATTCGAAGGATAAGCGGAAGACGGTCCTTTTAAGATT
3953 GAATTGGAAGACAATTCGAAG
1 GAATTGGAAGACAATTCGAAG
3974 AAGTTGATTC
Statistics
Matches: 293, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 293 1.00
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.25
Consensus pattern (50 bp):
GAATTGGAAGACAATTCGAAGGATAAGCGGAAGACGGTCCTTTTAAGATT
Found at i:3778 original size:150 final size:150
Alignment explanation
Indices: 3594--4016 Score: 526
Period size: 150 Copynumber: 2.8 Consensus size: 150
3584 GATGATTTTC
* * * *
3594 TAAAGAATGGAATTGGAAGACAATTCGAAGGATAAGCGGAAGACAGTCCTTTTAAGATTGGATTG
1 TAAAG-ATTGAATTGGAAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTTAAGATTGGATTG
* *
3659 GAAGACAATTCGAAGGTTGATCGGAAGACGATCCTTTAAAGATTGGATTGGAAGACAATTCGAAG
65 GAAGACAATTCGAAGGTTGATCGGAAGACGATCCTTTAAAGATTGAATTGGAAGACAATTCAAAG
* * *
3724 GTTGATCGGAAGACGATCCTT
130 GATAAGCGGAAGACGATCCTT
* *
3745 TAAAGATTGAATTGGAAGACAGTTCTAAGGATAAACGGAAGACGGTCCTTTTAAGA-TGGAATTG
1 TAAAGATTGAATTGGAAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTTAAGATTGG-ATTG
* * * * * * * * *
3809 GAAGACAGTTCAAAGGATAAGCAGAAGACGGTCCTTTTAAGATTGAATTGGAAGACAGTTCAAAG
65 GAAGACAATTCGAAGGTTGATCGGAAGACGATCCTTTAAAGATTGAATTGGAAGACAATTCAAAG
*
3874 GATAAGCGGAAGACGGTCCTT
130 GATAAGCGGAAGACGATCCTT
* ** * *
3895 TTAAGATTGAATTTAAAGACAGTTCAAAGGATAAGTGGAAGACGGTCCTTTTAAGATTGAATTGG
1 TAAAGATTGAATTGGAAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTTAAGATTGGATTGG
** *
3960 AAGACAATTCGAAGAAGTTGATTCGGAAGACGATCCTTT-GTGATTGAATCGGAAGAC
66 AAGACAATTCGAAG--GTTGA-TCGGAAGACGATCCTTTAAAGATTGAATTGGAAGAC
4017 GGTTTGAAGA
Statistics
Matches: 230, Mismatches: 37, Indels: 9
0.83 0.13 0.03
Matches are distributed among these distances:
149 3 0.01
150 188 0.82
151 7 0.03
152 18 0.08
153 14 0.06
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.25
Consensus pattern (150 bp):
TAAAGATTGAATTGGAAGACAGTTCAAAGGATAAGCGGAAGACGGTCCTTTTAAGATTGGATTGG
AAGACAATTCGAAGGTTGATCGGAAGACGATCCTTTAAAGATTGAATTGGAAGACAATTCAAAGG
ATAAGCGGAAGACGATCCTT
Found at i:4015 original size:52 final size:51
Alignment explanation
Indices: 3603--4046 Score: 229
Period size: 50 Copynumber: 8.8 Consensus size: 51
3593 CTAAAGAATG
* * * *
3603 GAATTGGAAGACAATTCGAAG--GATAAGCGGAAGAC-AGTCCTTTTAAGATT
1 GAATCGGAAGACAATTCGAAGAAGCTGATCGGAAGACGA-TCCTTTT-AGATT
* * * *
3653 GGATTGGAAGACAATTCGAAG--GTTGATCGGAAGACGATCCTTTAAAGATT
1 GAATCGGAAGACAATTCGAAGAAGCTGATCGGAAGACGATCCTTT-TAGATT
* * * *
3703 GGATTGGAAGACAATTCGAAG--GTTGATCGGAAGACGATCCTTTAAAGATT
1 GAATCGGAAGACAATTCGAAGAAGCTGATCGGAAGACGATCCTTT-TAGATT
* * * * * * * *
3753 GAATTGGAAGACAGTTCTAAG--GATAAACGGAAGACGGTCCTTTTAAGATG
1 GAATCGGAAGACAATTCGAAGAAGCTGATCGGAAGACGATCCTTTT-AGATT
* * * * * * * *
3803 GAATTGGAAGACAGTTC-AA-AGGATAAGCAGAAGACGGTCCTTTTAAGATT
1 GAATCGGAAGACAATTCGAAGAAGCTGATCGGAAGACGATCCTTTT-AGATT
* * * * * * *
3853 GAATTGGAAGACAGTTC-AA-AGGATAAGCGGAAGACGGTCCTTTTAAGATT
1 GAATCGGAAGACAATTCGAAGAAGCTGATCGGAAGACGATCCTTTT-AGATT
*** * * * * *
3903 GAATTTAAAGACAGTTC-AA-AGGATAAGT-GGAAGACGGTCCTTTTAAGATT
1 GAATCGGAAGACAATTCGAAGAAGCTGA-TCGGAAGACGATCCTTTT-AGATT
* *
3953 GAATTGGAAGACAATTCGAAGAAGTTGATTCGGAAGACGATCCTTTGT-GATT
1 GAATCGGAAGACAATTCGAAGAAGCTGA-TCGGAAGACGATCCTTT-TAGATT
** * *
4005 GAATCGGAAGACGGTTTGAAGAAGCTGATCGGAAGATGATCC
1 GAATCGGAAGACAATTCGAAGAAGCTGATCGGAAGACGATCC
4047 ACTCAAAAAT
Statistics
Matches: 349, Mismatches: 35, Indels: 19
0.87 0.09 0.05
Matches are distributed among these distances:
49 2 0.01
50 284 0.81
51 16 0.05
52 32 0.09
53 14 0.04
54 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.25
Consensus pattern (51 bp):
GAATCGGAAGACAATTCGAAGAAGCTGATCGGAAGACGATCCTTTTAGATT
Found at i:7062 original size:14 final size:14
Alignment explanation
Indices: 7035--7078 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
7025 TTAAGATTTG
*
7035 AAGAAAAAGCAAAA
1 AAGAAAAAGGAAAA
*
7049 AAGAAGAAGGAAAA
1 AAGAAAAAGGAAAA
7063 GAA-AAAAAGGAAAA
1 -AAGAAAAAGGAAAA
7077 AA
1 AA
7079 TACAGAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
13 2 0.08
14 22 0.85
15 2 0.08
ACGTcount: A:0.77, C:0.02, G:0.20, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGGAAAA
Found at i:7062 original size:20 final size:20
Alignment explanation
Indices: 7034--7071 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7024 ATTAAGATTT
*
7034 GAAGAAAAAGCAAAAAAGAA
1 GAAGAAAAAGAAAAAAAGAA
*
7054 GAAGGAAAAGAAAAAAAG
1 GAAGAAAAAGAAAAAAAG
7072 GAAAAAATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.24, T:0.00
Consensus pattern (20 bp):
GAAGAAAAAGAAAAAAAGAA
Found at i:10055 original size:6 final size:6
Alignment explanation
Indices: 10044--10086 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
10034 TAATAATTAA
* *
10044 ACATAT ACATAT ACATAT ACATAT ACATAT ATATAT ATATAT A
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT A
10087 ATTTATAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (6 bp):
ACATAT
Found at i:11444 original size:12 final size:12
Alignment explanation
Indices: 11423--11462 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
11413 GTTGTAGCCG
*
11423 GTTGCCCCATGC
1 GTTGCTCCATGC
11435 GTTGCTCCATGC
1 GTTGCTCCATGC
*
11447 GATGCTCCATGC
1 GTTGCTCCATGC
11459 GTTG
1 GTTG
11463 ACCAGTCCTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.10, C:0.33, G:0.28, T:0.30
Consensus pattern (12 bp):
GTTGCTCCATGC
Found at i:14541 original size:15 final size:15
Alignment explanation
Indices: 14517--14569 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
14507 TGCTAGGGTG
*
14517 AATGGCGCCAACAAC
1 AATGGTGCCAACAAC
*
14532 AATGGTGCCAACTAC
1 AATGGTGCCAACAAC
*
14547 AATGGTGCAAACAAC
1 AATGGTGCCAACAAC
*
14562 CATGGTGC
1 AATGGTGC
14570 AAATAATCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.15
Consensus pattern (15 bp):
AATGGTGCCAACAAC
Found at i:16921 original size:19 final size:20
Alignment explanation
Indices: 16890--16927 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
16880 TATTGACATT
16890 TAAAAATTGAAATT-AAAAG
1 TAAAAATTGAAATTCAAAAG
16909 TAAAATATT-AAATTCAAAA
1 TAAAA-ATTGAAATTCAAAA
16928 AATAATAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (20 bp):
TAAAAATTGAAATTCAAAAG
Found at i:17857 original size:145 final size:144
Alignment explanation
Indices: 17591--17879 Score: 461
Period size: 145 Copynumber: 2.0 Consensus size: 144
17581 CAGAAAAATA
* *
17591 CAAATGAGGTGCTGTTGGAAAGATGATTCCGAGATCTATAACTTTTATGTTATCTCGAGACCTAA
1 CAAATGAGGTGCTGTTGGAAAGATGATTCCGAGATCTACAACTTTTATGTTATCTCGAAACCTAA
* *
17656 TTCTGTCATTTCGAAGGACGATTTTGCTCTTGTAATTTCTGGGCAGAATTGATCTTCTCCTAAAC
66 TTCTGCCATTTCGAAGGACGATTTTGCCCTTGTAATTTCTGGGCAGAATTGATCTTCTCCTAAAC
17721 CGACTTGGAGAATG
131 CGACTTGGAGAATG
* * *
17735 CAAATGAGGTGTTGTTGGAAAGATGATTCTGAGATCTACAACTTTTGTGTTTATCTCGAAACCTA
1 CAAATGAGGTGCTGTTGGAAAGATGATTCCGAGATCTACAACTTTTATG-TTATCTCGAAACCTA
* ** * *
17800 ATTCTGCCGTTTCGGTGGACGATTTTGCCCTTGTAATTTCTTGGCAGAATTGGTCTTCTCCTAAA
65 ATTCTGCCATTTCGAAGGACGATTTTGCCCTTGTAATTTCTGGGCAGAATTGATCTTCTCCTAAA
17865 CCGACTTGGAGAATG
130 CCGACTTGGAGAATG
17880 TTTTGAACGA
Statistics
Matches: 132, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
144 45 0.34
145 87 0.66
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (144 bp):
CAAATGAGGTGCTGTTGGAAAGATGATTCCGAGATCTACAACTTTTATGTTATCTCGAAACCTAA
TTCTGCCATTTCGAAGGACGATTTTGCCCTTGTAATTTCTGGGCAGAATTGATCTTCTCCTAAAC
CGACTTGGAGAATG
Found at i:24572 original size:10 final size:10
Alignment explanation
Indices: 24557--24590 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
24547 CTGGTCGAAA
24557 TTTTTTTATT
1 TTTTTTTATT
*
24567 TTTTTTAATT
1 TTTTTTTATT
24577 TTTTTTATATT
1 TTTTTT-TATT
24588 TTT
1 TTT
24591 CGATATAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 15 0.71
11 6 0.29
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:26736 original size:32 final size:32
Alignment explanation
Indices: 26700--26773 Score: 107
Period size: 31 Copynumber: 2.3 Consensus size: 32
26690 TTAGTAATGG
26700 CAATTTAAAAATATGTTTTTAAAAA-AAGGGTA
1 CAATTTAAAAATATG-TTTTAAAAATAAGGGTA
*
26732 CAATTT-GAAATATGTTTTAAAAATAAGGGTA
1 CAATTTAAAAATATGTTTTAAAAATAAGGGTA
*
26763 CAATTGAAAAA
1 CAATTTAAAAA
26774 CATAAAGTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 9 0.24
31 19 0.51
32 9 0.24
ACGTcount: A:0.50, C:0.04, G:0.14, T:0.32
Consensus pattern (32 bp):
CAATTTAAAAATATGTTTTAAAAATAAGGGTA
Found at i:31040 original size:20 final size:20
Alignment explanation
Indices: 31015--31054 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
31005 AAATTTGTCA
*
31015 ACATTTGGTGTAATGATTCT
1 ACATTTGGTGTAACGATTCT
31035 ACATTTGGTGTAACGATTCT
1 ACATTTGGTGTAACGATTCT
31055 TTTTAAGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.42
Consensus pattern (20 bp):
ACATTTGGTGTAACGATTCT
Found at i:32510 original size:183 final size:182
Alignment explanation
Indices: 32199--32568 Score: 688
Period size: 183 Copynumber: 2.0 Consensus size: 182
32189 GTTTTTTTGG
32199 TCTT-TTTACGTATGTTTTTTTGTTATTTTGTAGAACTCTTAGGGGTAATCCAGGTATTCCAATC
1 TCTTCTTTACGTATGTTTTTTTGTTATTTTGTAGAACTCTTAGGGGTAATCCAGGTATTCCAATC
* *
32263 CTTTTTTGCCATTCACCATTGGTTTTCATGTAATTTGATGTGGTTGGCAATGGTGAATATGGTAT
66 CTTTTTTGCCATTCACCATTGGTTTTCATGTAATTTGATGTGGCTGGCAAGGGTGAATATGGTAT
32328 TTAAATTTTTTCTTTTTATCTCACCTAGGGTTTAATGTGTTTTTTGAGGGCT
131 TTAAATTTTTTCTTTTTATCTCACCTAGGGTTTAATGTGTTTTTTGAGGGCT
32380 TCTTCTTTACGTATGTTTTTTTTGTTATTTTGTAGAACTCTTAGGGGTAATCCAGGTATTCCAAT
1 TCTTCTTTACGTATG-TTTTTTTGTTATTTTGTAGAACTCTTAGGGGTAATCCAGGTATTCCAAT
*
32445 CCTTTTTTGCCCTTCACCATTGGTTTTCATGTAATTTGATGTGGCTGGCAAGGGTGAATATGGTA
65 CCTTTTTTGCCATTCACCATTGGTTTTCATGTAATTTGATGTGGCTGGCAAGGGTGAATATGGTA
*
32510 TTTAAATTTTTTCTTTTTATCTCACCTAGGGTTTAATGTGTTTTTTGAGGGTT
130 TTTAAATTTTTTCTTTTTATCTCACCTAGGGTTTAATGTGTTTTTTGAGGGCT
32563 TCTTCT
1 TCTTCT
32569 ATCTCACTTA
Statistics
Matches: 183, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
181 4 0.02
182 10 0.05
183 169 0.92
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (182 bp):
TCTTCTTTACGTATGTTTTTTTGTTATTTTGTAGAACTCTTAGGGGTAATCCAGGTATTCCAATC
CTTTTTTGCCATTCACCATTGGTTTTCATGTAATTTGATGTGGCTGGCAAGGGTGAATATGGTAT
TTAAATTTTTTCTTTTTATCTCACCTAGGGTTTAATGTGTTTTTTGAGGGCT
Found at i:32991 original size:23 final size:23
Alignment explanation
Indices: 32963--33008 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
32953 TTTTAGCATA
32963 CATAATTAGGCCTTAGTTTTGTT
1 CATAATTAGGCCTTAGTTTTGTT
*
32986 CATAATTAGGGCTTAGTTTTGTT
1 CATAATTAGGCCTTAGTTTTGTT
33009 GGATTAGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.11, G:0.20, T:0.48
Consensus pattern (23 bp):
CATAATTAGGCCTTAGTTTTGTT
Found at i:33567 original size:12 final size:12
Alignment explanation
Indices: 33550--33581 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
33540 CACTATCGTA
33550 ATATATAATATT
1 ATATATAATATT
33562 ATATATAATATT
1 ATATATAATATT
*
33574 ATAAATAA
1 ATATATAA
33582 AAAGCGTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
ATATATAATATT
Done.