Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007195.1 Corchorus capsularis cultivar CVL-1 contig07216, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33389

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1458--1519
15
4.0
16
72
16
67
29
20
29
20
1.98
1446--1515
31
2.3
31
82
7
88
28
18
31
21
1.97
14279--14337
30
1.9
30
83
10
75
33
15
3
47
1.62
14365--14413
15
3.5
15
67
16
50
36
8
0
55
1.30
14547--14584
19
2.0
20
85
15
53
28
5
2
63
1.30
14749--14910
22
7.3
22
78
9
150
34
8
17
38
1.81
14988--15081
22
4.3
21
72
12
73
36
7
19
37
1.80
14988--15081
44
2.1
44
78
7
102
36
7
19
37
1.80
15106--15360
22
11.6
23
72
14
112
42
9
13
34
1.77
15167--15359
44
4.4
44
74
8
164
43
8
12
35
1.74
15444--15535
20
4.4
20
83
4
94
46
6
15
31
1.71
15700--15802
23
4.5
23
77
10
104
37
7
14
39
1.75
15700--15804
46
2.3
45
84
11
126
38
8
14
39
1.77
15769--15815
22
2.1
22
88
7
69
36
8
14
40
1.77
19267--19356
33
2.7
32
83
10
119
40
22
6
31
1.80
19371--19467
33
2.9
33
81
0
86
44
21
10
23
1.83
21877--21931
21
2.5
22
79
5
67
50
5
9
34
1.57
21881--21980
22
4.6
22
71
7
87
47
8
10
35
1.67
33152--33258
22
5.0
22
76
6
121
22
17
5
54
1.64
33138--33258
43
2.8
43
81
6
113
23
19
4
52
1.65
33166--33199
14
2.4
14
85
0
50
17
23
2
55
1.55
33236--33302
35
1.9
34
87
3
98
20
20
2
55
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33152--33276
42
3.0
43
83
3
155
21
19
4
54
1.62
33336--33385
14
3.5
14
74
15
57
18
24
4
54
1.61

Tables:   1

The End!