Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000072.1 Corchorus capsularis cultivar CVL-1 contig00072, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 736

Length: 1228
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.24


Found at i:521 original size:14 final size:14

Alignment explanation


    Indices: 502--539  Score: 51
    Period size: 14  Copynumber: 2.7  Consensus size: 14

        492 TTTCAAAATT

                           
        502 GTTTTCAAGAAAAG-
          1 GTTTTCAA-AAAAGA

                       *  
        516 GTTTTCAAAAATGA
          1 GTTTTCAAAAAAGA

                      
        530 GTTTTCAAAA
          1 GTTTTCAAAA

        540 GGTTTTGAGT


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  13    4  0.18
  14   18  0.82

ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34


Consensus pattern (14 bp):   
GTTTTCAAAAAAGA

Found at i:1178 original size:2 final size:2

Alignment explanation


    Indices: 1173--1228  Score: 112
    Period size: 2  Copynumber: 28.0  Consensus size: 2

       1163 CAAGGAAAAA

                                                                          
       1173 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

                                
       1215 AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG


Statistics
Matches: 54,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   54  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
AG

Done.