Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007201.1 Corchorus capsularis cultivar CVL-1 contig07222, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85058

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1122--1161
19
2.2
19
95
4
73
22
15
5
57
1.57
1133--1173
22
1.9
22
85
5
57
29
7
4
58
1.46
2441--2466
10
2.6
10
100
0
52
23
7
19
50
1.73
3117--3147
2
15.0
2
93
6
53
48
0
3
48
1.17
8269--8326
30
1.9
30
89
0
89
20
17
24
37
1.93
10383--10468
42
2.0
42
90
0
136
23
41
26
8
1.82
25250--25324
27
2.7
27
81
4
87
16
14
26
42
1.86
29563--29600
5
7.6
5
100
0
76
18
0
0
81
0.69
30253--30365
33
3.4
33
92
0
181
19
44
26
9
1.82
33419--33499
33
2.5
33
85
0
108
22
41
23
12
1.87
35342--35458
33
3.5
33
84
4
139
24
42
23
8
1.82
38916--38997
33
2.6
32
86
9
98
24
41
25
8
1.83
42865--43018
33
4.7
33
86
3
195
25
44
22
7
1.80
47088--47190
33
3.1
33
84
2
127
22
37
30
9
1.86
48238--48271
10
3.3
10
88
8
50
85
0
0
14
0.60
61805--61832
13
2.2
13
100
0
56
14
17
46
21
1.84
69253--69348
46
2.1
46
100
0
192
35
12
14
37
1.84

Tables:   1

The End!