Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007202.1 Corchorus capsularis cultivar CVL-1 contig07223, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33478

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1552--1590
20
2.0
20
89
0
60
76
5
0
17
0.96
2576--2652
40
1.9
41
91
2
129
51
7
11
28
1.66
2574--2662
40
2.2
41
85
2
126
52
6
11
29
1.62
19366--19412
21
2.2
22
92
3
78
17
17
44
21
1.86
23547--23572
10
2.6
10
100
0
52
7
0
0
92
0.39
24600--24655
21
2.6
21
91
2
94
14
17
46
21
1.84
27077--27133
30
1.9
30
89
7
89
33
17
26
22
1.96
28286--28321
15
2.4
15
90
0
54
36
0
0
63
0.94
29211--29249
10
3.9
10
86
0
51
43
17
7
30
1.77
29211--29249
20
2.0
20
94
0
69
43
17
7
30
1.77
30039--30072
10
3.6
10
84
15
54
88
0
0
11
0.52
30232--30274
12
3.5
12
90
6
68
25
20
18
34
1.96
33092--33123
12
2.5
13
95
5
57
21
15
9
53
1.70
33117--33177
28
2.4
24
81
10
68
19
6
14
59
1.58

Tables:   1

The End!