Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007203.1 Corchorus capsularis cultivar CVL-1 contig07224, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51764

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1242--1610
114
3.2
114
83
3
456
23
23
22
30
1.99
1507--1692
82
2.3
82
86
3
268
22
23
20
33
1.97
3764--3822
19
2.9
21
73
21
61
35
18
3
42
1.67
3792--3823
11
2.9
11
90
0
55
43
18
0
37
1.51
3764--3823
22
2.9
22
76
19
65
36
18
3
41
1.67
8409--8442
10
3.0
12
83
16
54
5
26
41
26
1.78
14976--15009
10
3.0
12
83
16
54
5
26
41
26
1.78
16805--16842
18
2.1
18
90
0
58
39
15
34
10
1.82
19406--19455
17
2.9
17
93
0
91
28
16
36
20
1.93
22424--22455
6
5.5
6
96
3
57
31
0
12
56
1.37
22729--22797
35
2.0
34
91
2
111
33
11
7
47
1.67
25335--25369
17
2.0
18
94
5
63
65
17
5
11
1.43
30201--30235
17
2.0
18
94
5
63
65
17
5
11
1.43
44271--44301
11
2.8
11
95
0
53
0
22
0
77
0.77
45469--45531
30
2.1
30
96
0
117
14
20
14
50
1.77
46102--46150
24
2.0
25
84
4
64
16
8
4
71
1.26
46431--46504
26
2.8
26
79
4
85
44
21
13
20
1.85
48775--48865
43
2.1
43
100
0
182
35
15
5
43
1.70

Tables:   1

The End!