Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007205.1 Corchorus capsularis cultivar CVL-1 contig07226, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47513

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
329--522
43
4.7
42
73
15
149
55
6
20
18
1.65
287--514
22
10.9
20
70
14
108
53
5
21
19
1.65
314--450
42
3.2
41
78
9
132
54
5
19
21
1.64
426--560
21
6.3
21
79
4
119
56
5
20
17
1.62
2872--2897
2
13.0
2
100
0
52
50
0
0
50
1.00
4867--4984
59
2.0
59
98
0
227
50
6
17
25
1.71
5265--5625
62
5.8
62
92
1
564
27
23
12
37
1.90
5390--5501
36
3.4
36
67
23
109
26
22
13
37
1.91
5264--5683
186
2.3
183
87
3
585
27
23
12
37
1.90
6144--6171
10
2.8
10
100
0
56
14
10
10
64
1.50
6292--6319
10
2.8
10
100
0
56
14
10
10
64
1.50
6051--6320
148
1.8
148
99
0
531
18
27
6
47
1.73
6959--6993
17
2.1
17
88
0
52
2
28
14
54
1.54
22836--22939
40
2.6
40
86
7
140
30
16
8
44
1.78
27523--27640
59
2.0
59
98
0
227
48
6
19
25
1.73
34014--34047
11
3.2
10
84
15
50
50
17
2
29
1.61
37248--37328
42
1.9
41
85
9
110
8
28
41
20
1.82
39211--39318
33
3.3
33
81
5
137
44
19
8
27
1.79
40786--40814
14
2.0
15
93
6
51
17
0
0
82
0.66
46601--46922
107
3.0
107
98
0
626
32
16
11
38
1.85

Tables:   1

The End!